Index

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Identifier Index
`__add__`	Method in class `__builtin__.list`
`object`	Class in module `__builtin__`
`__bases__`	Variable in class `__builtin__.type`
`__basicsize__`	Variable in class `__builtin__.type`
`__call__`	Method in class `__builtin__.type`
`type`	Class in module `__builtin__`
`__cmp__`	Method in class `__builtin__.dict`
`__cmp__`	Method in class `__builtin__.type`
`__contains__`	Method in class `__builtin__.dict`
`__contains__`	Method in class `__builtin__.list`
`__contains__`	Method in class `mmLib.Structure.Atom`
`__contains__`	Method in class `mmLib.Structure.Fragment`
`__contains__`	Method in class `mmLib.Structure.Model`
`__contains__`	Method in class `mmLib.Structure.Segment`
`__contains__`	Method in class `mmLib.Structure.Structure`
`__contains__`	Method in class `mmLib.mmCIF.mmCIFRow`
`__deepcopy__`	Method in class `mmLib.Structure.Altloc`
`__deepcopy__`	Method in class `mmLib.Structure.AminoAcidResidue`
`__deepcopy__`	Method in class `mmLib.Structure.Atom`
`__deepcopy__`	Method in class `mmLib.Structure.Bond`
`__deepcopy__`	Method in class `mmLib.Structure.Chain`
`__deepcopy__`	Method in class `mmLib.Structure.Fragment`
`__deepcopy__`	Method in class `mmLib.Structure.Model`
`__deepcopy__`	Method in class `mmLib.Structure.NucleicAcidResidue`
`__deepcopy__`	Method in class `mmLib.Structure.Segment`
`__deepcopy__`	Method in class `mmLib.Structure.Structure`
`__deepcopy__`	Method in class `mmLib.mmCIF.mmCIFData`
`__deepcopy__`	Method in class `mmLib.mmCIF.mmCIFFile`
`__deepcopy__`	Method in class `mmLib.mmCIF.mmCIFRow`
`__deepcopy__`	Method in class `mmLib.mmCIF.mmCIFTable`
`__delattr__`	Method in class `__builtin__.object`
`__delattr__`	Method in class `__builtin__.type`
`__delitem__`	Method in class `__builtin__.dict`
`__delitem__`	Method in class `__builtin__.list`
`__delitem__`	Method in class `mmLib.mmCIF.mmCIFData`
`__delitem__`	Method in class `mmLib.mmCIF.mmCIFFile`
`__delitem__`	Method in class `mmLib.mmCIF.mmCIFRow`
`__delitem__`	Method in class `mmLib.mmCIF.mmCIFTable`
`__delslice__`	Method in class `__builtin__.list`
`__dictoffset__`	Variable in class `__builtin__.type`
`__eq__`	Method in class `__builtin__.dict`
`__eq__`	Method in class `__builtin__.list`
`__eq__`	Method in class `mmLib.Structure.FragmentID`
`__eq__`	Method in class `mmLib.mmCIF.mmCIFData`
`__eq__`	Method in class `mmLib.mmCIF.mmCIFFile`
`__eq__`	Method in class `mmLib.mmCIF.mmCIFRow`
`__eq__`	Method in class `mmLib.mmCIF.mmCIFTable`
`__flags__`	Variable in class `__builtin__.type`
`__ge__`	Method in class `__builtin__.dict`
`__ge__`	Method in class `__builtin__.list`
`__ge__`	Method in class `mmLib.Structure.Atom`
`__ge__`	Method in class `mmLib.Structure.Fragment`
`__ge__`	Method in class `mmLib.Structure.FragmentID`
`__ge__`	Method in class `mmLib.Structure.Model`
`__ge__`	Method in class `mmLib.Structure.Segment`
`__getattr__`	Method in class `mmLib.mmCIF.mmCIFData`
`__getattr__`	Method in class `mmLib.mmCIF.mmCIFFile`
`__getattr__`	Method in class `mmLib.mmCIF.mmCIFRow`
`__getattr__`	Method in class `mmLib.mmCIF.mmCIFTable`
`__getattribute__`	Method in class `__builtin__.dict`
`__getattribute__`	Method in class `__builtin__.list`
`__getattribute__`	Method in class `__builtin__.object`
`__getattribute__`	Method in class `__builtin__.type`
`__getitem__`	Method in class `__builtin__.dict`
`__getitem__`	Method in class `__builtin__.list`
`__getitem__`	Method in class `exceptions.Exception`
`__getitem__`	Method in class `mmLib.Structure.Atom`
`__getitem__`	Method in class `mmLib.Structure.Fragment`
`__getitem__`	Method in class `mmLib.Structure.Model`
`__getitem__`	Method in class `mmLib.Structure.Segment`
`__getitem__`	Method in class `mmLib.Structure.Structure`
`__getitem__`	Method in class `mmLib.mmCIF.mmCIFData`
`__getitem__`	Method in class `mmLib.mmCIF.mmCIFFile`
`__getitem__`	Method in class `mmLib.mmCIF.mmCIFRow`
`__getitem__`	Method in class `mmLib.mmCIF.mmCIFTable`
`__getslice__`	Method in class `__builtin__.list`
`__gt__`	Method in class `__builtin__.dict`
`__gt__`	Method in class `__builtin__.list`
`__gt__`	Method in class `mmLib.Structure.Atom`
`__gt__`	Method in class `mmLib.Structure.Fragment`
`__gt__`	Method in class `mmLib.Structure.FragmentID`
`__gt__`	Method in class `mmLib.Structure.Model`
`__gt__`	Method in class `mmLib.Structure.Segment`
`__hash__`	Method in class `__builtin__.dict`
`__hash__`	Method in class `__builtin__.list`
`__hash__`	Method in class `__builtin__.object`
`__hash__`	Method in class `__builtin__.type`
`__iadd__`	Method in class `__builtin__.list`
`__imul__`	Method in class `__builtin__.list`
`__init__`	Method in class `__builtin__.dict`
`__init__`	Method in class `__builtin__.list`
`__init__`	Method in class `__builtin__.object`
`__init__`	Method in class `exceptions.Exception`
`__init__`	Method in class `mmLib.ConsoleOutput.ConesoleOutput`
`__init__`	Method in class `mmLib.FileIO.ZCat`
`__init__`	Method in class `mmLib.GeometryDict.XYZDict`
`__init__`	Method in class `mmLib.Library.ElementDesc`
`__init__`	Method in class `mmLib.Library.MonomerDesc`
`__init__`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`__init__`	Method in class `mmLib.PDB.PDBValueError`
`__init__`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`__init__`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`__init__`	Method in class `mmLib.R3DDriver.TeeWrite`
`__init__`	Method in class `mmLib.Structure.AlphaHelix`
`__init__`	Method in class `mmLib.Structure.Atom`
`__init__`	Method in class `mmLib.Structure.AtomOverwrite`
`__init__`	Method in class `mmLib.Structure.BetaSheet`
`__init__`	Method in class `mmLib.Structure.Bond`
`__init__`	Method in class `mmLib.Structure.Chain`
`__init__`	Method in class `mmLib.Structure.Fragment`
`__init__`	Method in class `mmLib.Structure.FragmentID`
`__init__`	Method in class `mmLib.Structure.Model`
`__init__`	Method in class `mmLib.Structure.Segment`
`__init__`	Method in class `mmLib.Structure.Site`
`__init__`	Method in class `mmLib.Structure.Strand`
`__init__`	Method in class `mmLib.Structure.Structure`
`__init__`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`__init__`	Method in class `mmLib.StructureBuilder.StructureBuilderError`
`__init__`	Method in class `mmLib.Superposition.SuperpositionResults`
`__init__`	Method in class `mmLib.TLS.GLTLSAtomList`
`__init__`	Method in class `mmLib.TLS.GLTLSChain`
`__init__`	Method in class `mmLib.TLS.GLTLSGroup`
`__init__`	Method in class `mmLib.TLS.TLSFile`
`__init__`	Method in class `mmLib.TLS.TLSGroup`
`__init__`	Method in class `mmLib.TLS.TLSGroupDesc`
`__init__`	Method in class `mmLib.TLS.TLSStructureAnalysis`
`__init__`	Method in class `mmLib.UnitCell.UnitCell`
`__init__`	Method in class `mmLib.Viewer.GLAtomList`
`__init__`	Method in class `mmLib.Viewer.GLAxes`
`__init__`	Method in class `mmLib.Viewer.GLChain`
`__init__`	Method in class `mmLib.Viewer.GLDrawList`
`__init__`	Method in class `mmLib.Viewer.GLObject`
`__init__`	Method in class `mmLib.Viewer.GLPropertyDict`
`__init__`	Method in class `mmLib.Viewer.GLStructure`
`__init__`	Method in class `mmLib.Viewer.GLUnitCell`
`__init__`	Method in class `mmLib.Viewer.GLViewer`
`__init__`	Method in class `mmLib.mmCIF.mmCIFData`
`__init__`	Method in class `mmLib.mmCIF.mmCIFSyntaxError`
`__init__`	Method in class `mmLib.mmCIF.mmCIFTable`
`__init__`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`__itemsize__`	Variable in class `__builtin__.type`
`__iter__`	Method in class `__builtin__.dict`
`__iter__`	Method in class `__builtin__.list`
`__iter__`	Method in class `mmLib.FileIO.ZCat`
`__iter__`	Method in class `mmLib.Structure.Altloc`
`__iter__`	Method in class `mmLib.Structure.Atom`
`__iter__`	Method in class `mmLib.Structure.Fragment`
`__iter__`	Method in class `mmLib.Structure.Model`
`__iter__`	Method in class `mmLib.Structure.Segment`
`__iter__`	Method in class `mmLib.Structure.Structure`
`__le__`	Method in class `__builtin__.dict`
`__le__`	Method in class `__builtin__.list`
`__le__`	Method in class `mmLib.Structure.Atom`
`__le__`	Method in class `mmLib.Structure.Fragment`
`__le__`	Method in class `mmLib.Structure.FragmentID`
`__le__`	Method in class `mmLib.Structure.Model`
`__le__`	Method in class `mmLib.Structure.Segment`
`__len__`	Method in class `__builtin__.dict`
`__len__`	Method in class `__builtin__.list`
`__len__`	Method in class `mmLib.Structure.Atom`
`__len__`	Method in class `mmLib.Structure.Fragment`
`__len__`	Method in class `mmLib.Structure.Model`
`__len__`	Method in class `mmLib.Structure.Segment`
`__len__`	Method in class `mmLib.Structure.Structure`
`__lt__`	Method in class `__builtin__.dict`
`__lt__`	Method in class `__builtin__.list`
`__lt__`	Method in class `mmLib.Structure.Atom`
`__lt__`	Method in class `mmLib.Structure.Fragment`
`__lt__`	Method in class `mmLib.Structure.FragmentID`
`__lt__`	Method in class `mmLib.Structure.Model`
`__lt__`	Method in class `mmLib.Structure.Segment`
`__mro__`	Variable in class `__builtin__.type`
`__mul__`	Method in class `__builtin__.list`
`__name__`	Variable in class `__builtin__.type`
`__ne__`	Method in class `__builtin__.dict`
`__ne__`	Method in class `__builtin__.list`
`__ne__`	Method in class `mmLib.Structure.FragmentID`
`__new__`	Method in class `__builtin__.dict`
`__new__`	Method in class `__builtin__.list`
`__new__`	Method in class `__builtin__.object`
`__new__`	Method in class `__builtin__.type`
`__reduce__`	Method in class `__builtin__.object`
`__reduce_ex__`	Method in class `__builtin__.object`
`__repr__`	Method in class `__builtin__.dict`
`__repr__`	Method in class `__builtin__.list`
`__repr__`	Method in class `__builtin__.object`
`__repr__`	Method in class `__builtin__.type`
`__reversed__`	Method in class `__builtin__.list`
`__rmul__`	Method in class `__builtin__.list`
`__setattr__`	Method in class `__builtin__.object`
`__setattr__`	Method in class `__builtin__.type`
`__setattr__`	Method in class `mmLib.PDB.PDBFile`
`__setitem__`	Method in class `__builtin__.dict`
`__setitem__`	Method in class `__builtin__.list`
`__setitem__`	Method in class `mmLib.mmCIF.mmCIFData`
`__setitem__`	Method in class `mmLib.mmCIF.mmCIFRow`
`__setitem__`	Method in class `mmLib.mmCIF.mmCIFTable`
`__setslice__`	Method in class `__builtin__.list`
`__slots__`	Variable in class `mmLib.PDB.ANISOU`
`__slots__`	Variable in class `mmLib.PDB.ATOM`
`__slots__`	Variable in class `mmLib.PDB.AUTHOR`
`__slots__`	Variable in class `mmLib.PDB.CAVEAT`
`__slots__`	Variable in class `mmLib.PDB.CISPEP`
`__slots__`	Variable in class `mmLib.PDB.COMPND`
`__slots__`	Variable in class `mmLib.PDB.CONECT`
`__slots__`	Variable in class `mmLib.PDB.CRYST1`
`__slots__`	Variable in class `mmLib.PDB.CRYST2`
`__slots__`	Variable in class `mmLib.PDB.CRYST3`
`__slots__`	Variable in class `mmLib.PDB.CRYSTn`
`__slots__`	Variable in class `mmLib.PDB.DBREF`
`__slots__`	Variable in class `mmLib.PDB.END`
`__slots__`	Variable in class `mmLib.PDB.ENDMDL`
`__slots__`	Variable in class `mmLib.PDB.EXPDTA`
`__slots__`	Variable in class `mmLib.PDB.FORMUL`
`__slots__`	Variable in class `mmLib.PDB.HEADER`
`__slots__`	Variable in class `mmLib.PDB.HELIX`
`__slots__`	Variable in class `mmLib.PDB.HET`
`__slots__`	Variable in class `mmLib.PDB.HETATM`
`__slots__`	Variable in class `mmLib.PDB.HETNAM`
`__slots__`	Variable in class `mmLib.PDB.HETSYN`
`__slots__`	Variable in class `mmLib.PDB.HYDBND`
`__slots__`	Variable in class `mmLib.PDB.JRNL`
`__slots__`	Variable in class `mmLib.PDB.KEYWDS`
`__slots__`	Variable in class `mmLib.PDB.LINK`
`__slots__`	Variable in class `mmLib.PDB.MASTER`
`__slots__`	Variable in class `mmLib.PDB.MODEL`
`__slots__`	Variable in class `mmLib.PDB.MODRES`
`__slots__`	Variable in class `mmLib.PDB.MTRIX1`
`__slots__`	Variable in class `mmLib.PDB.MTRIX2`
`__slots__`	Variable in class `mmLib.PDB.MTRIX3`
`__slots__`	Variable in class `mmLib.PDB.MTRIXn`
`__slots__`	Variable in class `mmLib.PDB.OBSLTE`
`__slots__`	Variable in class `mmLib.PDB.ORIGX1`
`__slots__`	Variable in class `mmLib.PDB.ORIGX2`
`__slots__`	Variable in class `mmLib.PDB.ORIGX3`
`__slots__`	Variable in class `mmLib.PDB.ORIGXn`
`__slots__`	Variable in class `mmLib.PDB.REMARK`
`__slots__`	Variable in class `mmLib.PDB.REVDAT`
`__slots__`	Variable in class `mmLib.PDB.SCALE1`
`__slots__`	Variable in class `mmLib.PDB.SCALE2`
`__slots__`	Variable in class `mmLib.PDB.SCALE3`
`__slots__`	Variable in class `mmLib.PDB.SCALEn`
`__slots__`	Variable in class `mmLib.PDB.SEQADV`
`__slots__`	Variable in class `mmLib.PDB.SEQRES`
`__slots__`	Variable in class `mmLib.PDB.SHEET`
`__slots__`	Variable in class `mmLib.PDB.SIGUIJ`
`__slots__`	Variable in class `mmLib.PDB.SITE`
`__slots__`	Variable in class `mmLib.PDB.SLTBRG`
`__slots__`	Variable in class `mmLib.PDB.SOURCE`
`__slots__`	Variable in class `mmLib.PDB.SPRSDE`
`__slots__`	Variable in class `mmLib.PDB.SSBOND`
`__slots__`	Variable in class `mmLib.PDB.TER`
`__slots__`	Variable in class `mmLib.PDB.TITLE`
`__slots__`	Variable in class `mmLib.PDB.TURN`
`__slots__`	Variable in class `mmLib.PDB.TVECT`
`__slots__`	Variable in class `mmLib.mmCIF.mmCIFData`
`__slots__`	Variable in class `mmLib.mmCIF.mmCIFData`
`__slots__`	Variable in class `mmLib.mmCIF.mmCIFData`
`__slots__`	Variable in class `mmLib.mmCIF.mmCIFRow`
`__slots__`	Variable in class `mmLib.mmCIF.mmCIFTable`
`__str__`	Method in class `__builtin__.object`
`__str__`	Method in class `exceptions.Exception`
`__str__`	Method in class `mmLib.PDB.PDBRecord`
`__str__`	Method in class `mmLib.PDB.PDBValueError`
`__str__`	Method in class `mmLib.Structure.AlphaHelix`
`__str__`	Method in class `mmLib.Structure.Atom`
`__str__`	Method in class `mmLib.Structure.AtomOverwrite`
`__str__`	Method in class `mmLib.Structure.BetaSheet`
`__str__`	Method in class `mmLib.Structure.Bond`
`__str__`	Method in class `mmLib.Structure.Chain`
`__str__`	Method in class `mmLib.Structure.Fragment`
`__str__`	Method in class `mmLib.Structure.FragmentID`
`__str__`	Method in class `mmLib.Structure.Model`
`__str__`	Method in class `mmLib.Structure.Residue`
`__str__`	Method in class `mmLib.Structure.Segment`
`__str__`	Method in class `mmLib.Structure.Site`
`__str__`	Method in class `mmLib.Structure.Strand`
`__str__`	Method in class `mmLib.Structure.Structure`
`__str__`	Method in class `mmLib.StructureBuilder.StructureBuilderError`
`__str__`	Method in class `mmLib.UnitCell.UnitCell`
`__str__`	Method in class `mmLib.mmCIF.mmCIFData`
`__str__`	Method in class `mmLib.mmCIF.mmCIFFile`
`__str__`	Method in class `mmLib.mmCIF.mmCIFSyntaxError`
`__str__`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`__subclasses__`	Method in class `__builtin__.type`
`__weakrefoffset__`	Variable in class `__builtin__.type`
`add`	Method in class `mmLib.GeometryDict.XYZDict`
`add__atom_site`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`add__cell`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`add__entity`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`add__entity_poly`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`add__entry`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`add__symmetry`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`add_alpha_helix`	Method in class `mmLib.Structure.Model`
`add_alpha_helix`	Method in class `mmLib.Structure.Structure`
`add_ATOM`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_atom`	Method in class `mmLib.Structure.Altloc`
`add_atom`	Method in class `mmLib.Structure.Fragment`
`add_atom`	Method in class `mmLib.Structure.Model`
`add_atom`	Method in class `mmLib.Structure.Segment`
`add_atom`	Method in class `mmLib.Structure.Structure`
`add_atom_records`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_beta_sheet`	Method in class `mmLib.Structure.Model`
`add_beta_sheet`	Method in class `mmLib.Structure.Structure`
`add_bonds_from_covalent_distance`	Method in class `mmLib.Structure.Structure`
`add_bonds_from_library`	Method in class `mmLib.Structure.Structure`
`add_chain`	Method in class `mmLib.Structure.Model`
`add_chain`	Method in class `mmLib.Structure.Structure`
`add_connectivity_annotation_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_connectivity_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_coordinate_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_crystallographic_coordinate_transformation_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_fragment`	Method in class `mmLib.Structure.Chain`
`add_fragment`	Method in class `mmLib.Structure.Model`
`add_fragment`	Method in class `mmLib.Structure.Segment`
`add_fragment`	Method in class `mmLib.Structure.Site`
`add_fragment`	Method in class `mmLib.Structure.Structure`
`add_gl_tls_group`	Method in class `mmLib.TLS.GLTLSChain`
`add_heterogen_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_miscellaneous_fatures_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_model`	Method in class `mmLib.Structure.Structure`
`add_primary_structure_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_range`	Method in class `mmLib.TLS.TLSGroupDesc`
`add_secondary_structure_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`add_segment`	Method in class `mmLib.Structure.AlphaHelix`
`add_segment`	Method in class `mmLib.Structure.Strand`
`add_site`	Method in class `mmLib.Structure.Model`
`add_site`	Method in class `mmLib.Structure.Structure`
`add_strand`	Method in class `mmLib.Structure.BetaSheet`
`add_table`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`add_tables`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`add_title_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`addquaternion`	Function in module `mmLib.AtomMath`
`AlphaHelix`	Class in module `mmLib.Structure`
`alt_loc_list`	Method in class `mmLib.Structure.Structure`
`ALT_RES_NAME_DICT`	Variable in module `mmLib.Library`
`Altloc`	Class in module `mmLib.Structure`
`AMINO_ACID13_DICT`	Variable in module `mmLib.Library`
`AMINO_ACID31_DICT`	Variable in module `mmLib.Library`
`AMINO_ACID3_LIST`	Variable in module `mmLib.Library`
`AminoAcidResidue`	Class in module `mmLib.Structure`
`ANISOU`	Class in module `mmLib.PDB`
`append`	Method in class `__builtin__.list`
`append`	Method in class `mmLib.PDB.PDBFile`
`append`	Method in class `mmLib.mmCIF.mmCIFData`
`append`	Method in class `mmLib.mmCIF.mmCIFFile`
`append`	Method in class `mmLib.mmCIF.mmCIFTable`
`append_column`	Method in class `mmLib.mmCIF.mmCIFTable`
`ATOM`	Class in module `mmLib.PDB`
`Atom`	Class in module `mmLib.Structure`
`atom_filter`	Method in class `mmLib.TLS.TLSStructureAnalysis`
`ATOM_get_name`	Function in module `mmLib.PDB`
`AtomList`	Class in module `mmLib.Structure`
`AtomMath`	Module in package `mmLib`
`AtomOverwrite`	Class in module `mmLib.Structure`
`AUTHOR`	Class in module `mmLib.PDB`
`autoset_columns`	Method in class `mmLib.mmCIF.mmCIFTable`
`BASE_LINE_WIDTH`	Variable in module `mmLib.R3DDriver`
`BetaSheet`	Class in module `mmLib.Structure`
`Bond`	Class in module `mmLib.Structure`
`bond_processor`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`bookkeeping_section`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`CA_PIVOT_ATOMS`	Variable in module `mmLib.TLS`
`calc_adv_anisotropy`	Method in class `mmLib.Structure.AtomList`
`calc_adv_anisotropy3`	Method in class `mmLib.Structure.AtomList`
`calc_adv_temp_factor`	Method in class `mmLib.Structure.AtomList`
`calc_adv_U`	Method in class `mmLib.Structure.AtomList`
`calc_alpha_deg`	Method in class `mmLib.UnitCell.UnitCell`
`calc_angle`	Function in module `mmLib.AtomMath`
`calc_anisotropy`	Function in module `mmLib.AtomMath`
`calc_anisotropy`	Method in class `mmLib.Structure.Atom`
`calc_anisotropy3`	Method in class `mmLib.Structure.Atom`
`calc_atom_centroid`	Function in module `mmLib.AtomMath`
`calc_atom_mean_temp_factor`	Function in module `mmLib.AtomMath`
`calc_beta_deg`	Method in class `mmLib.UnitCell.UnitCell`
`calc_CCuij`	Function in module `mmLib.AtomMath`
`calc_cell`	Method in class `mmLib.UnitCell.UnitCell`
`calc_centroid`	Method in class `mmLib.Structure.AtomList`
`calc_COR`	Method in class `mmLib.TLS.TLSGroup`
`calc_distance`	Function in module `mmLib.AtomMath`
`calc_DP2uij`	Function in module `mmLib.AtomMath`
`calc_frac_to_orth`	Method in class `mmLib.UnitCell.UnitCell`
`calc_fractionalization_matrix`	Method in class `mmLib.UnitCell.UnitCell`
`calc_gamma_deg`	Method in class `mmLib.UnitCell.UnitCell`
`calc_geom_key`	Method in class `mmLib.GeometryDict.XYZDict`
`calc_inertia_tensor`	Function in module `mmLib.AtomMath`
`calc_itls_center_of_reaction`	Function in module `mmLib.TLS`
`calc_itls_uiso`	Function in module `mmLib.TLS`
`calc_length`	Method in class `mmLib.Structure.Bond`
`calc_LS_displacement`	Function in module `mmLib.TLS`
`calc_mainchain_bond_angle`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_mainchain_bond_length`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_next_alt_loc_id`	Method in class `mmLib.Structure.Altloc`
`calc_orth_symop`	Method in class `mmLib.UnitCell.UnitCell`
`calc_orth_symop2`	Method in class `mmLib.UnitCell.UnitCell`
`calc_orth_to_frac`	Method in class `mmLib.UnitCell.UnitCell`
`calc_orthogonalization_matrix`	Method in class `mmLib.UnitCell.UnitCell`
`calc_pucker_torsion`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_reciprocal_unit_cell`	Method in class `mmLib.UnitCell.UnitCell`
`calc_rmsd`	Function in module `mmLib.TLS`
`calc_s11_s22_s33`	Method in class `mmLib.TLS.TLSGroup`
`calc_s11_s22_s33`	Function in module `mmLib.TLS`
`calc_Suij`	Function in module `mmLib.AtomMath`
`calc_TLS_center_of_reaction`	Function in module `mmLib.TLS`
`calc_tls_info`	Method in class `mmLib.TLS.TLSGroup`
`calc_TLS_least_squares_fit`	Method in class `mmLib.TLS.TLSGroup`
`calc_TLS_least_squares_fit`	Function in module `mmLib.TLS`
`calc_tls_name`	Method in class `mmLib.TLS.TLSGroupDesc`
`calc_TLS_plus_b_least_squares_fit`	Function in module `mmLib.TLS`
`calc_TLSCA_least_squares_fit`	Function in module `mmLib.TLS`
`calc_torsion`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_angle`	Function in module `mmLib.AtomMath`
`calc_torsion_chi`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_chi1`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_chi2`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_chi3`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_chi4`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_omega`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_phi`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_torsion_psi`	Method in class `mmLib.Structure.AminoAcidResidue`
`calc_Uiso`	Method in class `mmLib.Structure.Atom`
`calc_Utls`	Function in module `mmLib.TLS`
`calc_v`	Method in class `mmLib.UnitCell.UnitCell`
`calc_volume`	Method in class `mmLib.UnitCell.UnitCell`
`CAVEAT`	Class in module `mmLib.PDB`
`cell_search_iter`	Method in class `mmLib.UnitCell.UnitCell`
`Chain`	Class in module `mmLib.Structure`
`ChainOverwrite`	Class in module `mmLib.Structure`
`CIF_BUILD_TABLES`	Variable in module `mmLib.mmCIFBuilder`
`CISPEP`	Class in module `mmLib.PDB`
`clear`	Method in class `__builtin__.dict`
`close`	Method in class `mmLib.R3DDriver.TeeWrite`
`color_by_gof`	Method in class `mmLib.TLS.GLTLSChain`
`color_by_group`	Method in class `mmLib.TLS.GLTLSChain`
`COLOR_NAMES`	Variable in module `mmLib.Colors`
`COLOR_NAMES_CAPITALIZED`	Variable in module `mmLib.Colors`
`COLOR_RGBF`	Variable in module `mmLib.Colors`
`COLOR_RGBI`	Variable in module `mmLib.Colors`
`Colors`	Module in package `mmLib`
`COLORS`	Variable in module `mmLib.Colors`
`columns`	Variable in class `mmLib.mmCIF.mmCIFTable`
`columns_lower`	Variable in class `mmLib.mmCIF.mmCIFTable`
`complete_L`	Method in class `mmLib.TLS.TLSFileFormatPDB`
`complete_S`	Method in class `mmLib.TLS.TLSFileFormatPDB`
`complete_T`	Method in class `mmLib.TLS.TLSFileFormatPDB`
`COMPND`	Class in module `mmLib.PDB`
`CONECT`	Class in module `mmLib.PDB`
`ConesoleOutput`	Class in module `mmLib.ConsoleOutput`
`confirm_table`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`console_output_object`	Variable in module `mmLib.ConsoleOutput`
`ConsoleOutput`	Module in package `mmLib`
`construct_fragments`	Method in class `mmLib.Structure.Site`
`construct_segment`	Method in class `mmLib.Structure.AlphaHelix`
`construct_segment`	Method in class `mmLib.Structure.Chain`
`construct_segment`	Method in class `mmLib.Structure.Segment`
`construct_segment`	Method in class `mmLib.Structure.Strand`
`construct_segments`	Method in class `mmLib.Structure.BetaSheet`
`construct_sequence_list`	Method in class `mmLib.Structure.Chain`
`construct_sub_segment`	Method in class `mmLib.Structure.Segment`
`construct_tls_group`	Method in class `mmLib.TLS.TLSGroupDesc`
`construct_tls_group_with_atoms`	Method in class `mmLib.TLS.TLSGroupDesc`
`construct_tls_groups`	Method in class `mmLib.TLS.TLSFile`
`construct_tls_groups_with_atoms`	Method in class `mmLib.TLS.TLSFile`
`convert_frag_id_load`	Method in class `mmLib.TLS.TLSFileFormatTLSOUT`
`convert_frag_id_save`	Method in class `mmLib.TLS.TLSFileFormatTLSOUT`
`copy`	Method in class `__builtin__.dict`
`count`	Method in class `__builtin__.list`
`count_all_atoms`	Method in class `mmLib.Structure.Fragment`
`count_all_atoms`	Method in class `mmLib.Structure.Model`
`count_all_atoms`	Method in class `mmLib.Structure.Segment`
`count_all_atoms`	Method in class `mmLib.Structure.Structure`
`count_amino_acids`	Method in class `mmLib.Structure.Model`
`count_amino_acids`	Method in class `mmLib.Structure.Segment`
`count_amino_acids`	Method in class `mmLib.Structure.Structure`
`count_atoms`	Method in class `mmLib.Structure.Fragment`
`count_atoms`	Method in class `mmLib.Structure.Model`
`count_atoms`	Method in class `mmLib.Structure.Segment`
`count_atoms`	Method in class `mmLib.Structure.Structure`
`count_bonds`	Method in class `mmLib.Structure.Model`
`count_bonds`	Method in class `mmLib.Structure.Structure`
`count_chains`	Method in class `mmLib.Structure.Model`
`count_chains`	Method in class `mmLib.Structure.Structure`
`count_fragments`	Method in class `mmLib.Structure.Model`
`count_fragments`	Method in class `mmLib.Structure.Segment`
`count_fragments`	Method in class `mmLib.Structure.Structure`
`count_models`	Method in class `mmLib.Structure.Structure`
`count_non_standard_residues`	Method in class `mmLib.Structure.Model`
`count_non_standard_residues`	Method in class `mmLib.Structure.Segment`
`count_non_standard_residues`	Method in class `mmLib.Structure.Structure`
`count_nucleic_acids`	Method in class `mmLib.Structure.Model`
`count_nucleic_acids`	Method in class `mmLib.Structure.Segment`
`count_nucleic_acids`	Method in class `mmLib.Structure.Structure`
`count_standard_residues`	Method in class `mmLib.Structure.Model`
`count_standard_residues`	Method in class `mmLib.Structure.Segment`
`count_standard_residues`	Method in class `mmLib.Structure.Structure`
`count_waters`	Method in class `mmLib.Structure.Model`
`count_waters`	Method in class `mmLib.Structure.Segment`
`count_waters`	Method in class `mmLib.Structure.Structure`
`create_bond`	Method in class `mmLib.Structure.Atom`
`create_bonds`	Method in class `mmLib.Structure.Atom`
`create_bonds`	Method in class `mmLib.Structure.Fragment`
`create_bonds`	Method in class `mmLib.Structure.Residue`
`cross`	Function in module `mmLib.AtomMath`
`CRYST1`	Class in module `mmLib.PDB`
`CRYST2`	Class in module `mmLib.PDB`
`CRYST3`	Class in module `mmLib.PDB`
`CRYSTn`	Class in module `mmLib.PDB`
`data`	Variable in class `mmLib.mmCIF.mmCIFTable`
`data_type`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`DBREF`	Class in module `mmLib.PDB`
`debug`	Method in class `mmLib.ConsoleOutput.ConesoleOutput`
`debug`	Function in module `mmLib.ConsoleOutput`
`dict`	Class in module `__builtin__`
`disable`	Function in module `mmLib.ConsoleOutput`
`dmatrix`	Function in module `mmLib.AtomMath`
`dmatrixu`	Function in module `mmLib.AtomMath`
`draw_axes`	Method in class `mmLib.Viewer.GLAxes`
`draw_cell`	Method in class `mmLib.Viewer.GLUnitCell`
`draw_fan`	Method in class `mmLib.TLS.GLTLSAtomList`
`draw_L1_surface`	Method in class `mmLib.TLS.GLTLSGroup`
`draw_L2_surface`	Method in class `mmLib.TLS.GLTLSGroup`
`draw_L3_surface`	Method in class `mmLib.TLS.GLTLSGroup`
`draw_tensors`	Method in class `mmLib.TLS.GLTLSGroup`
`draw_tls_surface`	Method in class `mmLib.TLS.GLTLSGroup`
`draw_unit_cell`	Method in class `mmLib.Viewer.GLUnitCell`
`draw_Utls_axes`	Method in class `mmLib.TLS.GLTLSGroup`
`draw_Utls_ellipse`	Method in class `mmLib.TLS.GLTLSGroup`
`draw_Utls_rms`	Method in class `mmLib.TLS.GLTLSGroup`
`ELEMENT_CACHE`	Variable in module `mmLib.Library`
`ELEMENT_CIF_FILE`	Variable in module `mmLib.Library`
`ELEMENT_DATA_PATH`	Variable in module `mmLib.Library`
`ELEMENT_SYMBOL_DICT`	Variable in module `mmLib.Library`
`ElementDesc`	Class in module `mmLib.Library`
`enable`	Function in module `mmLib.ConsoleOutput`
`END`	Class in module `mmLib.PDB`
`ENDMDL`	Class in module `mmLib.PDB`
`Exception`	Class in module `exceptions`
`EXPDTA`	Class in module `mmLib.PDB`
`extend`	Method in class `__builtin__.list`
`fatal`	Method in class `mmLib.ConsoleOutput.ConesoleOutput`
`fatal`	Function in module `mmLib.ConsoleOutput`
`file`	Variable in class `mmLib.mmCIF.mmCIFData`
`file`	Variable in class `mmLib.mmCIF.mmCIFData`
`file`	Variable in class `mmLib.mmCIF.mmCIFData`
`FileIO`	Module in package `mmLib`
`FileIOUnsupportedFormat`	Class in module `mmLib.FileIO`
`FinishMe`	Class in module `mmLib.R3DDriver`
`fit_TLS_segments`	Method in class `mmLib.TLS.TLSStructureAnalysis`
`form_mstring`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`FORMUL`	Class in module `mmLib.PDB`
`Fragment`	Class in module `mmLib.Structure`
`fragment_id_cmp`	Function in module `mmLib.Structure`
`fragment_id_eq`	Function in module `mmLib.Structure`
`fragment_id_ge`	Function in module `mmLib.Structure`
`fragment_id_gt`	Function in module `mmLib.Structure`
`fragment_id_le`	Function in module `mmLib.Structure`
`fragment_id_lt`	Function in module `mmLib.Structure`
`fragment_id_split`	Function in module `mmLib.Structure`
`FragmentID`	Class in module `mmLib.Structure`
`FragmentOverwrite`	Class in module `mmLib.Structure`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`fromkeys`	Method in class `__builtin__.type`
`GAUSS3C`	Variable in module `mmLib.Gaussian`
`Gaussian`	Module in package `mmLib`
`gen_token_iter`	Method in class `mmLib.mmCIF.mmCIFFileParser`
`GeometryDict`	Module in package `mmLib`
`get`	Method in class `__builtin__.dict`
`get`	Method in class `mmLib.mmCIF.mmCIFData`
`get`	Method in class `mmLib.mmCIF.mmCIFFile`
`get`	Method in class `mmLib.mmCIF.mmCIFRow`
`get`	Method in class `mmLib.mmCIF.mmCIFTable`
`get_alt_loc`	Method in class `mmLib.Structure.Atom`
`get_atom`	Method in class `mmLib.Structure.Fragment`
`get_atom1`	Method in class `mmLib.Structure.Bond`
`get_atom2`	Method in class `mmLib.Structure.Bond`
`get_beta_sheet`	Method in class `mmLib.Structure.Strand`
`get_bond`	Method in class `mmLib.Structure.Atom`
`get_bonded_atom`	Method in class `mmLib.Structure.Atom`
`get_chain`	Method in class `mmLib.Structure.AlphaHelix`
`get_chain`	Method in class `mmLib.Structure.Atom`
`get_chain`	Method in class `mmLib.Structure.Fragment`
`get_chain`	Method in class `mmLib.Structure.Model`
`get_chain`	Method in class `mmLib.Structure.Segment`
`get_chain`	Method in class `mmLib.Structure.Strand`
`get_chain`	Method in class `mmLib.Structure.Structure`
`get_chain1`	Method in class `mmLib.Structure.Bond`
`get_chain2`	Method in class `mmLib.Structure.Bond`
`get_data`	Method in class `mmLib.mmCIF.mmCIFFile`
`get_default_alt_loc`	Method in class `mmLib.Structure.Structure`
`get_default_model`	Method in class `mmLib.Structure.Structure`
`get_deposition_date`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`get_entity_desc_from_id`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`get_entity_desc_from_sequence`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`get_entry_id`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`get_equivalent_atom`	Method in class `mmLib.Structure.Fragment`
`get_equivalent_atom`	Method in class `mmLib.Structure.Model`
`get_equivalent_atom`	Method in class `mmLib.Structure.Segment`
`get_equivalent_atom`	Method in class `mmLib.Structure.Structure`
`get_file_arg`	Function in module `mmLib.FileIO`
`get_file_extension`	Function in module `mmLib.FileIO`
`get_fragment`	Method in class `mmLib.Structure.Atom`
`get_fragment`	Method in class `mmLib.Structure.Segment`
`get_fragment1`	Method in class `mmLib.Structure.Bond`
`get_fragment2`	Method in class `mmLib.Structure.Bond`
`get_fragment_id`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`get_fragment_sequence_index`	Method in class `mmLib.Structure.Chain`
`get_lower`	Method in class `mmLib.mmCIF.mmCIFRow`
`get_model`	Method in class `mmLib.Structure.AlphaHelix`
`get_model`	Method in class `mmLib.Structure.Atom`
`get_model`	Method in class `mmLib.Structure.BetaSheet`
`get_model`	Method in class `mmLib.Structure.Fragment`
`get_model`	Method in class `mmLib.Structure.Segment`
`get_model`	Method in class `mmLib.Structure.Site`
`get_model`	Method in class `mmLib.Structure.Strand`
`get_model`	Method in class `mmLib.Structure.Structure`
`get_model1`	Method in class `mmLib.Structure.Bond`
`get_model2`	Method in class `mmLib.Structure.Bond`
`get_offset_fragment`	Method in class `mmLib.Structure.Fragment`
`get_offset_residue`	Method in class `mmLib.Structure.Residue`
`get_partner`	Method in class `mmLib.Structure.Bond`
`get_row`	Method in class `mmLib.mmCIF.mmCIFTable`
`get_row1`	Method in class `mmLib.mmCIF.mmCIFTable`
`get_segment`	Method in class `mmLib.Structure.AlphaHelix`
`get_segment`	Method in class `mmLib.Structure.Strand`
`get_single`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`get_struct_keywords`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`get_structure`	Method in class `mmLib.Structure.AlphaHelix`
`get_structure`	Method in class `mmLib.Structure.Atom`
`get_structure`	Method in class `mmLib.Structure.BetaSheet`
`get_structure`	Method in class `mmLib.Structure.Fragment`
`get_structure`	Method in class `mmLib.Structure.Model`
`get_structure`	Method in class `mmLib.Structure.Segment`
`get_structure`	Method in class `mmLib.Structure.Site`
`get_structure`	Method in class `mmLib.Structure.Strand`
`get_structure`	Method in class `mmLib.Structure.Structure`
`get_structure1`	Method in class `mmLib.Structure.Bond`
`get_structure2`	Method in class `mmLib.Structure.Bond`
`get_table`	Method in class `mmLib.mmCIF.mmCIFData`
`get_table`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`get_tag`	Method in class `mmLib.mmCIF.mmCIFData`
`get_U`	Method in class `mmLib.Structure.Atom`
`getitem_lower`	Method in class `mmLib.mmCIF.mmCIFRow`
`GetSpaceGroup`	Function in module `mmLib.SpaceGroups`
`glaccel_glr_axis`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glaccel_glr_sphere`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glaccel_glr_tube`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glaccel_glr_Uellipse`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glaccel_glr_Urms`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glal_calc_color`	Method in class `mmLib.TLS.GLTLSAtomList`
`glal_calc_color`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_color_label`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_color_range`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_color_trace`	Method in class `mmLib.TLS.GLTLSAtomList`
`glal_calc_color_trace`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_color_U`	Method in class `mmLib.TLS.GLTLSAtomList`
`glal_calc_color_Uaxes`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_color_Uellipse`	Method in class `mmLib.TLS.GLTLSAtomList`
`glal_calc_color_Uellipse`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_color_Urms`	Method in class `mmLib.TLS.GLTLSAtomList`
`glal_calc_color_Urms`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_position`	Method in class `mmLib.Viewer.GLAtomList`
`glal_calc_U`	Method in class `mmLib.TLS.GLTLSAtomList`
`glal_calc_U`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_ball_stick`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_cpk`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_cross`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_labels`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_lines`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_trace`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_Uaxes`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_Uellipse`	Method in class `mmLib.Viewer.GLAtomList`
`glal_draw_Urms`	Method in class `mmLib.Viewer.GLAtomList`
`glal_iter_atoms`	Method in class `mmLib.TLS.GLTLSAtomList`
`glal_iter_atoms`	Method in class `mmLib.Viewer.GLAtomList`
`glal_iter_atoms`	Method in class `mmLib.Viewer.GLChain`
`glal_iter_atoms_filtered`	Method in class `mmLib.Viewer.GLAtomList`
`glal_iter_chains`	Method in class `mmLib.Viewer.GLAtomList`
`glal_iter_chains`	Method in class `mmLib.Viewer.GLChain`
`glal_iter_fragments`	Method in class `mmLib.Viewer.GLAtomList`
`glal_iter_fragments`	Method in class `mmLib.Viewer.GLChain`
`glal_iter_models`	Method in class `mmLib.Viewer.GLAtomList`
`glal_iter_visible_atoms`	Method in class `mmLib.Viewer.GLAtomList`
`glal_rebuild_atom_dicts`	Method in class `mmLib.Viewer.GLAtomList`
`glal_res_type_color_dict`	Variable in class `mmLib.Viewer.GLAtomList`
`glal_res_type_color_dict`	Variable in class `mmLib.Viewer.GLAtomList`
`glal_res_type_color_dict`	Variable in class `mmLib.Viewer.GLAtomList`
`glal_update_color_value`	Method in class `mmLib.Viewer.GLAtomList`
`glal_update_properties`	Method in class `mmLib.Viewer.GLAtomList`
`GLAtomList`	Class in module `mmLib.Viewer`
`GLAxes`	Class in module `mmLib.Viewer`
`GLChain`	Class in module `mmLib.Viewer`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_color_list`	Variable in class `mmLib.Viewer.GLDrawList`
`gldl_draw`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_draw_method_compile`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_draw_method_delete_compiled`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_draw_method_delete_compiled_all_drivers`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_draw_method_get`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_draw_method_install`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_draw_transparent`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_get_glviewer`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_install_draw_methods`	Method in class `mmLib.TLS.GLTLSAtomList`
`gldl_install_draw_methods`	Method in class `mmLib.TLS.GLTLSGroup`
`gldl_install_draw_methods`	Method in class `mmLib.Viewer.GLAtomList`
`gldl_install_draw_methods`	Method in class `mmLib.Viewer.GLAxes`
`gldl_install_draw_methods`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_install_draw_methods`	Method in class `mmLib.Viewer.GLUnitCell`
`gldl_iter_multidraw_all`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_iter_multidraw_animate`	Method in class `mmLib.TLS.GLTLSAtomList`
`gldl_iter_multidraw_self`	Method in class `mmLib.TLS.GLTLSAtomList`
`gldl_iter_multidraw_self`	Method in class `mmLib.TLS.GLTLSGroup`
`gldl_iter_multidraw_self`	Method in class `mmLib.Viewer.GLAtomList`
`gldl_iter_multidraw_self`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_pop_matrix`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_property_color_rgbf`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_push_matrix`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_redraw`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_render`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_render_draw_methods`	Method in class `mmLib.Viewer.GLDrawList`
`gldl_update_cb`	Method in class `mmLib.Viewer.GLDrawList`
`GLDrawList`	Class in module `mmLib.Viewer`
`glo_add_child`	Method in class `mmLib.Viewer.GLObject`
`glo_add_property`	Method in class `mmLib.Viewer.GLObject`
`glo_add_update_callback`	Method in class `mmLib.Viewer.GLObject`
`glo_append_child`	Method in class `mmLib.Viewer.GLObject`
`glo_count_descendants`	Method in class `mmLib.Viewer.GLObject`
`glo_get_child`	Method in class `mmLib.Viewer.GLObject`
`glo_get_child_path`	Method in class `mmLib.Viewer.GLObject`
`glo_get_degree`	Method in class `mmLib.Viewer.GLObject`
`glo_get_depth`	Method in class `mmLib.Viewer.GLObject`
`glo_get_glstructure`	Method in class `mmLib.Viewer.GLObject`
`glo_get_index_path`	Method in class `mmLib.Viewer.GLObject`
`glo_get_lowest_common_ancestor`	Method in class `mmLib.Viewer.GLObject`
`glo_get_parent`	Method in class `mmLib.Viewer.GLObject`
`glo_get_parent_list`	Method in class `mmLib.Viewer.GLObject`
`glo_get_path`	Method in class `mmLib.Viewer.GLObject`
`glo_get_properties_id`	Method in class `mmLib.Viewer.GLObject`
`glo_get_property_desc`	Method in class `mmLib.Viewer.GLObject`
`glo_get_root`	Method in class `mmLib.Viewer.GLObject`
`glo_init_properties`	Method in class `mmLib.Viewer.GLObject`
`glo_install_properties`	Method in class `mmLib.TLS.GLTLSAtomList`
`glo_install_properties`	Method in class `mmLib.TLS.GLTLSChain`
`glo_install_properties`	Method in class `mmLib.TLS.GLTLSGroup`
`glo_install_properties`	Method in class `mmLib.Viewer.GLAtomList`
`glo_install_properties`	Method in class `mmLib.Viewer.GLAxes`
`glo_install_properties`	Method in class `mmLib.Viewer.GLChain`
`glo_install_properties`	Method in class `mmLib.Viewer.GLDrawList`
`glo_install_properties`	Method in class `mmLib.Viewer.GLObject`
`glo_install_properties`	Method in class `mmLib.Viewer.GLStructure`
`glo_install_properties`	Method in class `mmLib.Viewer.GLUnitCell`
`glo_install_properties`	Method in class `mmLib.Viewer.GLViewer`
`glo_is_descendant_of`	Method in class `mmLib.Viewer.GLObject`
`glo_iter_children`	Method in class `mmLib.Viewer.GLObject`
`glo_iter_preorder_traversal`	Method in class `mmLib.Viewer.GLObject`
`glo_iter_property_desc`	Method in class `mmLib.Viewer.GLObject`
`glo_link_child_property`	Method in class `mmLib.Viewer.GLObject`
`glo_name`	Method in class `mmLib.Viewer.GLChain`
`glo_name`	Method in class `mmLib.Viewer.GLObject`
`glo_name`	Method in class `mmLib.Viewer.GLStructure`
`glo_prepend_child`	Method in class `mmLib.Viewer.GLObject`
`glo_remove`	Method in class `mmLib.Viewer.GLDrawList`
`glo_remove`	Method in class `mmLib.Viewer.GLObject`
`glo_remove_child`	Method in class `mmLib.Viewer.GLDrawList`
`glo_remove_child`	Method in class `mmLib.Viewer.GLObject`
`glo_remove_update_callback`	Method in class `mmLib.Viewer.GLObject`
`glo_set_name`	Method in class `mmLib.Viewer.GLObject`
`glo_set_properties_id`	Method in class `mmLib.Viewer.GLObject`
`glo_update_properties`	Method in class `mmLib.Viewer.GLObject`
`glo_update_properties_path`	Method in class `mmLib.Viewer.GLObject`
`GLObject`	Class in module `mmLib.Viewer`
`GLPropertyDefault`	Class in module `mmLib.Viewer`
`GLPropertyDict`	Class in module `mmLib.Viewer`
`glr_axis`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_axis`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_begin_lines`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_begin_lines`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_begin_quads`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_begin_quads`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_begin_triangle_fan`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_begin_triangle_fan`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_begin_triangles`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_begin_triangles`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_compile_current`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_compile_delete`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_compile_end`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_compile_exists`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_compile_render`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_compile_start`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_compile_supported`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_compile_supported`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_construct_header`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_cross`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_cross`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_end`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_end_quads`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_end_triangle_fan`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_init_state`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_light_two_sides_disable`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_light_two_sides_disable`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_light_two_sides_enable`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_light_two_sides_enable`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_lighting_disable`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_lighting_disable`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_lighting_enable`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_lighting_enable`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_line`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_line`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_mult_matrix_R`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_mult_matrix_R`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_mult_matrix_Rt`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_mult_matrix_Rt`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_normal`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_normal`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_normal3`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_normal3`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_normalize_disable`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_normalize_disable`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_normalize_enable`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_normalize_enable`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_pop_matrix`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_pop_matrix`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_push_matrix`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_push_matrix`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_render_begin`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_render_begin`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_render_end`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_render_end`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_rotate_axis`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_rotate_axis`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_set_line_width`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_set_line_width`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_set_material_rgb`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_set_material_rgb`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_set_material_rgba`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_set_material_rgba`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_set_render_png_path`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_set_render_program_path`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_set_render_stdin`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_sphere`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_sphere`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_text`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_text`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_translate`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_translate`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_translate3`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_translate3`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_tube`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_tube`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_Uaxes`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_Uaxes`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_Uellipse`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_Uellipse`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_Urms`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_Urms`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_vertex`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex3`	Method in class `mmLib.OpenGLDriver.OpenGLDriver`
`glr_vertex3`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex_quads_1`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex_quads_2`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex_quads_3`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex_quads_4`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex_triangle_fan_1`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex_triangle_fan_2`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_vertex_triangle_fan_3`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`glr_write_objects`	Method in class `mmLib.R3DDriver.Raster3DDriver`
`gls_add_chain`	Method in class `mmLib.Viewer.GLStructure`
`GLStructure`	Class in module `mmLib.Viewer`
`gltls_iter_atoms`	Method in class `mmLib.TLS.GLTLSGroup`
`GLTLSAtomList`	Class in module `mmLib.TLS`
`GLTLSChain`	Class in module `mmLib.TLS`
`GLTLSGroup`	Class in module `mmLib.TLS`
`GLUnitCell`	Class in module `mmLib.Viewer`
`glv_add_draw_list`	Method in class `mmLib.Viewer.GLViewer`
`glv_add_struct`	Method in class `mmLib.Viewer.GLViewer`
`glv_background_color_rgbf`	Method in class `mmLib.Viewer.GLViewer`
`glv_calc_struct_orientation`	Method in class `mmLib.Viewer.GLViewer`
`glv_clip`	Method in class `mmLib.Viewer.GLViewer`
`glv_init`	Method in class `mmLib.Viewer.GLViewer`
`glv_redraw`	Method in class `mmLib.Viewer.GLViewer`
`glv_remove_draw_list`	Method in class `mmLib.Viewer.GLViewer`
`glv_render`	Method in class `mmLib.Viewer.GLViewer`
`glv_render_one`	Method in class `mmLib.Viewer.GLViewer`
`glv_resize`	Method in class `mmLib.Viewer.GLViewer`
`glv_straif`	Method in class `mmLib.Viewer.GLViewer`
`glv_trackball`	Method in class `mmLib.Viewer.GLViewer`
`glv_update_cb`	Method in class `mmLib.Viewer.GLViewer`
`glv_zoom`	Method in class `mmLib.Viewer.GLViewer`
`GLViewer`	Class in module `mmLib.Viewer`
`goodness_color`	Function in module `mmLib.TLS`
`has_amino_acids`	Method in class `mmLib.Structure.Model`
`has_amino_acids`	Method in class `mmLib.Structure.Segment`
`has_amino_acids`	Method in class `mmLib.Structure.Structure`
`has_column`	Method in class `mmLib.mmCIF.mmCIFTable`
`has_key`	Method in class `__builtin__.dict`
`has_key`	Method in class `mmLib.mmCIF.mmCIFData`
`has_key`	Method in class `mmLib.mmCIF.mmCIFFile`
`has_key`	Method in class `mmLib.mmCIF.mmCIFRow`
`has_key_lower`	Method in class `mmLib.mmCIF.mmCIFRow`
`has_non_standard_residues`	Method in class `mmLib.Structure.Model`
`has_non_standard_residues`	Method in class `mmLib.Structure.Segment`
`has_non_standard_residues`	Method in class `mmLib.Structure.Structure`
`has_nucleic_acids`	Method in class `mmLib.Structure.Model`
`has_nucleic_acids`	Method in class `mmLib.Structure.Segment`
`has_nucleic_acids`	Method in class `mmLib.Structure.Structure`
`has_standard_residues`	Method in class `mmLib.Structure.Model`
`has_standard_residues`	Method in class `mmLib.Structure.Segment`
`has_standard_residues`	Method in class `mmLib.Structure.Structure`
`has_table`	Method in class `mmLib.mmCIF.mmCIFData`
`has_waters`	Method in class `mmLib.Structure.Model`
`has_waters`	Method in class `mmLib.Structure.Segment`
`has_waters`	Method in class `mmLib.Structure.Structure`
`HEADER`	Class in module `mmLib.PDB`
`HELIX`	Class in module `mmLib.PDB`
`HELIX_CLASS_LIST`	Variable in module `mmLib.PDBBuilder`
`HET`	Class in module `mmLib.PDB`
`HETATM`	Class in module `mmLib.PDB`
`HETNAM`	Class in module `mmLib.PDB`
`HETSYN`	Class in module `mmLib.PDB`
`HYDBND`	Class in module `mmLib.PDB`
`index`	Method in class `__builtin__.list`
`index`	Method in class `mmLib.Structure.Fragment`
`index`	Method in class `mmLib.Structure.Model`
`index`	Method in class `mmLib.Structure.Segment`
`index`	Method in class `mmLib.Structure.Structure`
`insert`	Method in class `__builtin__.list`
`insert`	Method in class `mmLib.PDB.PDBFile`
`insert`	Method in class `mmLib.mmCIF.mmCIFData`
`insert`	Method in class `mmLib.mmCIF.mmCIFFile`
`insert`	Method in class `mmLib.mmCIF.mmCIFTable`
`is_amino_acid`	Method in class `mmLib.Library.MonomerDesc`
`is_amino_acid`	Method in class `mmLib.Structure.AminoAcidResidue`
`is_amino_acid`	Method in class `mmLib.Structure.Fragment`
`is_cis`	Method in class `mmLib.Structure.AminoAcidResidue`
`is_homolog`	Method in class `mmLib.Structure.Segment`
`is_non_standard_residue`	Method in class `mmLib.Library.MonomerDesc`
`is_nucleic_acid`	Method in class `mmLib.Library.MonomerDesc`
`is_nucleic_acid`	Method in class `mmLib.Structure.Fragment`
`is_nucleic_acid`	Method in class `mmLib.Structure.NucleicAcidResidue`
`is_null`	Method in class `mmLib.TLS.TLSGroup`
`is_null`	Method in class `mmLib.TLS.TLSGroupDesc`
`is_single`	Method in class `mmLib.mmCIF.mmCIFTable`
`is_standard_residue`	Method in class `mmLib.Library.MonomerDesc`
`is_standard_residue`	Method in class `mmLib.Structure.AminoAcidResidue`
`is_standard_residue`	Method in class `mmLib.Structure.Fragment`
`is_standard_residue`	Method in class `mmLib.Structure.NucleicAcidResidue`
`is_water`	Method in class `mmLib.Library.MonomerDesc`
`is_water`	Method in class `mmLib.Structure.AminoAcidResidue`
`is_water`	Method in class `mmLib.Structure.Fragment`
`is_water`	Method in class `mmLib.Structure.NucleicAcidResidue`
`items`	Method in class `__builtin__.dict`
`iter_all`	Method in class `mmLib.GeometryDict.XYZDict`
`iter_all_amino_acids`	Method in class `mmLib.Structure.Structure`
`iter_all_atoms`	Method in class `mmLib.Structure.AlphaHelix`
`iter_all_atoms`	Method in class `mmLib.Structure.BetaSheet`
`iter_all_atoms`	Method in class `mmLib.Structure.Fragment`
`iter_all_atoms`	Method in class `mmLib.Structure.Model`
`iter_all_atoms`	Method in class `mmLib.Structure.Segment`
`iter_all_atoms`	Method in class `mmLib.Structure.Site`
`iter_all_atoms`	Method in class `mmLib.Structure.Strand`
`iter_all_atoms`	Method in class `mmLib.Structure.Structure`
`iter_all_chains`	Method in class `mmLib.Structure.Structure`
`iter_all_fragments`	Method in class `mmLib.Structure.Structure`
`iter_all_nucleic_acids`	Method in class `mmLib.Structure.Structure`
`iter_alpha_helicies`	Method in class `mmLib.Structure.Model`
`iter_alpha_helicies`	Method in class `mmLib.Structure.Structure`
`iter_alt_loc`	Method in class `mmLib.Structure.Atom`
`iter_amino_acids`	Method in class `mmLib.Structure.Model`
`iter_amino_acids`	Method in class `mmLib.Structure.Segment`
`iter_amino_acids`	Method in class `mmLib.Structure.Structure`
`iter_atm_Utls`	Method in class `mmLib.TLS.TLSGroup`
`iter_atoms`	Method in class `mmLib.Structure.AlphaHelix`
`iter_atoms`	Method in class `mmLib.Structure.BetaSheet`
`iter_atoms`	Method in class `mmLib.Structure.Fragment`
`iter_atoms`	Method in class `mmLib.Structure.Model`
`iter_atoms`	Method in class `mmLib.Structure.Segment`
`iter_atoms`	Method in class `mmLib.Structure.Site`
`iter_atoms`	Method in class `mmLib.Structure.Strand`
`iter_atoms`	Method in class `mmLib.Structure.Structure`
`iter_atoms`	Method in class `mmLib.TLS.TLSGroupDesc`
`iter_atoms_by_distance`	Method in class `mmLib.Structure.Atom`
`iter_beta_sheets`	Method in class `mmLib.Structure.Model`
`iter_beta_sheets`	Method in class `mmLib.Structure.Structure`
`iter_bonded_atoms`	Method in class `mmLib.Structure.Atom`
`iter_bonds`	Method in class `mmLib.Structure.Atom`
`iter_bonds`	Method in class `mmLib.Structure.Fragment`
`iter_bonds`	Method in class `mmLib.Structure.Model`
`iter_bonds`	Method in class `mmLib.Structure.Segment`
`iter_bonds`	Method in class `mmLib.Structure.Structure`
`iter_chains`	Method in class `mmLib.Structure.Model`
`iter_chains`	Method in class `mmLib.Structure.Structure`
`iter_contact_distance`	Method in class `mmLib.GeometryDict.XYZDict`
`iter_cube_intersection`	Method in class `mmLib.GeometryDict.XYZDict`
`iter_fit_TLS_segments`	Method in class `mmLib.TLS.TLSStructureAnalysis`
`iter_fragments`	Method in class `mmLib.Structure.AlphaHelix`
`iter_fragments`	Method in class `mmLib.Structure.BetaSheet`
`iter_fragments`	Method in class `mmLib.Structure.Model`
`iter_fragments`	Method in class `mmLib.Structure.Segment`
`iter_fragments`	Method in class `mmLib.Structure.Site`
`iter_fragments`	Method in class `mmLib.Structure.Strand`
`iter_fragments`	Method in class `mmLib.Structure.Structure`
`iter_fragments`	Function in module `mmLib.Structure`
`iter_itls_uiso`	Function in module `mmLib.TLS`
`iter_models`	Method in class `mmLib.Structure.Structure`
`iter_non_standard_residues`	Method in class `mmLib.Structure.Model`
`iter_non_standard_residues`	Method in class `mmLib.Structure.Segment`
`iter_non_standard_residues`	Method in class `mmLib.Structure.Structure`
`iter_nucleic_acids`	Method in class `mmLib.Structure.Model`
`iter_nucleic_acids`	Method in class `mmLib.Structure.Segment`
`iter_nucleic_acids`	Method in class `mmLib.Structure.Structure`
`iter_orth_symops`	Method in class `mmLib.Viewer.GLStructure`
`iter_pdb_records`	Function in module `mmLib.PDB`
`iter_rows`	Method in class `mmLib.mmCIF.mmCIFTable`
`iter_segments`	Method in class `mmLib.TLS.TLSStructureAnalysis`
`iter_sequence`	Method in class `mmLib.Structure.Chain`
`iter_sites`	Method in class `mmLib.Structure.Model`
`iter_sites`	Method in class `mmLib.Structure.Structure`
`iter_sphere_intersection`	Method in class `mmLib.GeometryDict.XYZDict`
`iter_standard_residues`	Method in class `mmLib.Structure.Model`
`iter_standard_residues`	Method in class `mmLib.Structure.Segment`
`iter_standard_residues`	Method in class `mmLib.Structure.Structure`
`iter_strands`	Method in class `mmLib.Structure.BetaSheet`
`iter_struct_orth_symops`	Method in class `mmLib.UnitCell.UnitCell`
`iter_waters`	Method in class `mmLib.Structure.Model`
`iter_waters`	Method in class `mmLib.Structure.Segment`
`iter_waters`	Method in class `mmLib.Structure.Structure`
`iteritems`	Method in class `__builtin__.dict`
`iterkeys`	Method in class `__builtin__.dict`
`itervalues`	Method in class `__builtin__.dict`
`join_tag`	Method in class `mmLib.mmCIF.mmCIFData`
`JRNL`	Class in module `mmLib.PDB`
`keys`	Method in class `__builtin__.dict`
`KEYWDS`	Class in module `mmLib.PDB`
`length`	Function in module `mmLib.AtomMath`
`Library`	Module in package `mmLib`
`library_construct_element_desc`	Function in module `mmLib.Library`
`library_construct_monomer_desc`	Function in module `mmLib.Library`
`library_get_element_desc`	Function in module `mmLib.Library`
`library_get_monomer_desc`	Function in module `mmLib.Library`
`library_guess_element_from_name`	Function in module `mmLib.Library`
`library_is_amino_acid`	Function in module `mmLib.Library`
`library_is_nucleic_acid`	Function in module `mmLib.Library`
`library_is_water`	Function in module `mmLib.Library`
`LINK`	Class in module `mmLib.PDB`
`list`	Class in module `__builtin__`
`load`	Method in class `mmLib.TLS.TLSFile`
`load`	Method in class `mmLib.TLS.TLSFileFormat`
`load`	Method in class `mmLib.TLS.TLSFileFormatPDB`
`load`	Method in class `mmLib.TLS.TLSFileFormatTLSOUT`
`load_alpha_helicies`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`load_atom`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`load_atom`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`load_beta_sheets`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`load_bonds`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`load_file`	Method in class `mmLib.PDB.PDBFile`
`load_file`	Method in class `mmLib.mmCIF.mmCIFFile`
`load_sequence`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`load_sites`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`load_structure_id`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`load_supported`	Method in class `mmLib.TLS.TLSFileFormat`
`load_supported`	Method in class `mmLib.TLS.TLSFileFormatPDB`
`load_supported`	Method in class `mmLib.TLS.TLSFileFormatTLSOUT`
`load_unit_cell`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`LoadStructure`	Function in module `mmLib.FileIO`
`MARGIN`	Variable in module `mmLib.R3DDriver`
`MASTER`	Class in module `mmLib.PDB`
`matrixmultiply43`	Function in module `mmLib.R3DDriver`
`MAX_LINE`	Variable in module `mmLib.mmCIF`
`mmCIF`	Module in package `mmLib`
`mmCIFBuilder`	Module in package `mmLib`
`mmCIFData`	Class in module `mmLib.mmCIF`
`mmCIFDB`	Module in package `mmLib`
`mmCIFDB`	Class in module `mmLib.mmCIFDB`
`mmCIFDictionary`	Class in module `mmLib.mmCIF`
`mmCIFError`	Class in module `mmLib.mmCIF`
`mmCIFFile`	Class in module `mmLib.mmCIF`
`mmCIFFileBuilder`	Class in module `mmLib.mmCIFBuilder`
`mmCIFFileParser`	Class in module `mmLib.mmCIF`
`mmCIFFileWriter`	Class in module `mmLib.mmCIF`
`mmCIFRow`	Class in module `mmLib.mmCIF`
`mmCIFSave`	Class in module `mmLib.mmCIF`
`mmCIFStructureBuilder`	Class in module `mmLib.mmCIFBuilder`
`mmCIFSyntaxError`	Class in module `mmLib.mmCIF`
`mmCIFTable`	Class in module `mmLib.mmCIF`
`mmLib`	Package
`MMLIB_MONOMER_DATA_PATH`	Variable in module `mmLib.Library`
`MMLIB_MONOMERS_CIF`	Variable in module `mmLib.Library`
`MODEL`	Class in module `mmLib.PDB`
`Model`	Class in module `mmLib.Structure`
`ModelOverwrite`	Class in module `mmLib.Structure`
`MODRES`	Class in module `mmLib.PDB`
`MONOMER_RES_NAME_CACHE`	Variable in module `mmLib.Library`
`MonomerDesc`	Class in module `mmLib.Library`
`mro`	Method in class `__builtin__.type`
`MTRIX1`	Class in module `mmLib.PDB`
`MTRIX2`	Class in module `mmLib.PDB`
`MTRIX3`	Class in module `mmLib.PDB`
`MTRIXn`	Class in module `mmLib.PDB`
`name`	Variable in class `mmLib.mmCIF.mmCIFData`
`name`	Variable in class `mmLib.mmCIF.mmCIFData`
`name`	Variable in class `mmLib.mmCIF.mmCIFData`
`name`	Variable in class `mmLib.mmCIF.mmCIFTable`
`name_service`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`new_atom_serial`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`new_data`	Method in class `mmLib.mmCIF.mmCIFFile`
`new_row`	Method in class `mmLib.mmCIF.mmCIFTable`
`new_table`	Method in class `mmLib.mmCIF.mmCIFData`
`next_serial_number`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`normalize`	Function in module `mmLib.AtomMath`
`NUCLEIC_ACID_LIST`	Variable in module `mmLib.Library`
`NUCLEIC_ACID_RES_NAME_DICT`	Variable in module `mmLib.Library`
`NucleicAcidResidue`	Class in module `mmLib.Structure`
`object`	Class in module `__builtin__`
`OBSLTE`	Class in module `mmLib.PDB`
`open_fileobj`	Function in module `mmLib.FileIO`
`OpenFile`	Function in module `mmLib.FileIO`
`OpenGLDriver`	Module in package `mmLib`
`OpenGLDriver`	Class in module `mmLib.OpenGLDriver`
`ORIGX1`	Class in module `mmLib.PDB`
`ORIGX2`	Class in module `mmLib.PDB`
`ORIGX3`	Class in module `mmLib.PDB`
`ORIGXn`	Class in module `mmLib.PDB`
`parse`	Method in class `mmLib.mmCIF.mmCIFFileParser`
`parse_file`	Method in class `mmLib.mmCIF.mmCIFFileParser`
`PDB`	Module in package `mmLib`
`pdb_error`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`pdb_regex_dict`	Variable in class `mmLib.TLS.TLSFileFormatPDB`
`PDBBuilder`	Module in package `mmLib`
`PDBError`	Class in module `mmLib.PDB`
`PDBFile`	Class in module `mmLib.PDB`
`PDBFileBuilder`	Class in module `mmLib.PDBBuilder`
`PDBRecord`	Class in module `mmLib.PDB`
`PDBRecordMap`	Variable in module `mmLib.PDB`
`PDBRecordOrder`	Variable in module `mmLib.PDB`
`PDBStructureBuilder`	Class in module `mmLib.PDBBuilder`
`PDBValueError`	Class in module `mmLib.PDB`
`pop`	Method in class `__builtin__.dict`
`pop`	Method in class `__builtin__.list`
`popitem`	Method in class `__builtin__.dict`
`preprocess_AUTHOR`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`preprocess_COMPND`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`preprocess_default`	Method in class `mmLib.PDB.RecordProcessor`
`preprocess_EXPDTA`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`preprocess_KEYWDS`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`preprocess_SEQRES`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`preprocess_SOURCE`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`preprocess_TITLE`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process`	Method in class `mmLib.PDB.AUTHOR`
`process`	Method in class `mmLib.PDB.CAVEAT`
`process`	Method in class `mmLib.PDB.COMPND`
`process`	Method in class `mmLib.PDB.EXPDTA`
`process`	Method in class `mmLib.PDB.KEYWDS`
`process`	Method in class `mmLib.PDB.OBSLTE`
`process`	Method in class `mmLib.PDB.REVDAT`
`process`	Method in class `mmLib.PDB.SEQRES`
`process`	Method in class `mmLib.PDB.SOURCE`
`process`	Method in class `mmLib.PDB.SPRSDE`
`process`	Method in class `mmLib.PDB.TITLE`
`process_ANISOU`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_ATOM`	Method in class `mmLib.PDB.RecordProcessor`
`process_ATOM`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_CONECT`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_CRYST1`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_default`	Method in class `mmLib.PDB.RecordProcessor`
`process_ENDMDL`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_HEADER`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_HELIX`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_HETATM`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_HYDBND`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_LINK`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_MODEL`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_pdb_records`	Method in class `mmLib.PDB.RecordProcessor`
`process_REMARK`	Method in class `mmLib.TLS.TLSFileFormatPDB`
`process_SHEET`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_SIGATM`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_SIGUIJ`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_SITE`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_SLTBRG`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`process_SSBOND`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`PROP_FRAC_RANGE`	Variable in module `mmLib.Viewer`
`PROP_LINE_RANGE`	Variable in module `mmLib.Viewer`
`PROP_OPACITY_RANGE`	Variable in module `mmLib.Viewer`
`PROP_PROBABILTY_RANGE`	Variable in module `mmLib.Viewer`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`PropertyDefault`	Variable in class `mmLib.Viewer.GLObject`
`quaternionrmatrix`	Function in module `mmLib.AtomMath`
`QuaternionToRotationMatrix`	Function in module `mmLib.Superposition`
`R3DDriver`	Module in package `mmLib`
`Raster3DDriver`	Class in module `mmLib.R3DDriver`
`RCSB_MONOMER_DATA_FILE`	Variable in module `mmLib.Library`
`RCSB_MONOMER_DATA_PATH`	Variable in module `mmLib.Library`
`RCSB_USE_ZIP`	Variable in module `mmLib.Library`
`RCSB_ZIP`	Variable in module `mmLib.Library`
`read`	Method in class `mmLib.PDB.PDBRecord`
`read_atoms`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`read_atoms`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_atoms`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`read_atoms_finalize`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_end`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_end_finalize`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_metadata`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`read_metadata`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_metadata`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`read_metadata_finalize`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_sequence`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`read_start`	Method in class `mmLib.PDBBuilder.PDBStructureBuilder`
`read_start`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_start`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`read_start_finalize`	Method in class `mmLib.StructureBuilder.StructureBuilder`
`read_struct_conf`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`read_struct_conn`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`read_structure_id`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`read_unit_cell`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`readlines`	Method in class `mmLib.FileIO.ZCat`
`reccat`	Method in class `mmLib.PDB.PDBRecord`
`reccat_dictlist`	Method in class `mmLib.PDB.PDBRecord`
`reccat_list`	Method in class `mmLib.PDB.PDBRecord`
`reccat_multi`	Method in class `mmLib.PDB.PDBRecord`
`reccat_tuplelist`	Method in class `mmLib.PDB.PDBRecord`
`RecordProcessor`	Class in module `mmLib.PDB`
`REMARK`	Class in module `mmLib.PDB`
`remove`	Method in class `__builtin__.list`
`remove`	Method in class `mmLib.GeometryDict.XYZDict`
`remove`	Method in class `mmLib.mmCIF.mmCIFData`
`remove`	Method in class `mmLib.mmCIF.mmCIFTable`
`remove_alpha_helix`	Method in class `mmLib.Structure.Model`
`remove_alt_loc`	Method in class `mmLib.Structure.Atom`
`remove_atom`	Method in class `mmLib.Structure.Altloc`
`remove_atom`	Method in class `mmLib.Structure.Fragment`
`remove_atom`	Method in class `mmLib.Structure.Model`
`remove_atom`	Method in class `mmLib.Structure.Segment`
`remove_atom`	Method in class `mmLib.Structure.Structure`
`remove_beta_sheet`	Method in class `mmLib.Structure.Model`
`remove_chain`	Method in class `mmLib.Structure.Model`
`remove_chain`	Method in class `mmLib.Structure.Structure`
`remove_column`	Method in class `mmLib.mmCIF.mmCIFTable`
`remove_fragment`	Method in class `mmLib.Structure.Chain`
`remove_fragment`	Method in class `mmLib.Structure.Model`
`remove_fragment`	Method in class `mmLib.Structure.Segment`
`remove_fragment`	Method in class `mmLib.Structure.Structure`
`remove_model`	Method in class `mmLib.Structure.Structure`
`remove_sequence`	Method in class `mmLib.Structure.Chain`
`remove_site`	Method in class `mmLib.Structure.Model`
`Residue`	Class in module `mmLib.Structure`
`REVDAT`	Class in module `mmLib.PDB`
`reverse`	Method in class `__builtin__.list`
`rgbf2rgbi`	Function in module `mmLib.Colors`
`rgbi2rgbf`	Function in module `mmLib.Colors`
`rmatrix`	Function in module `mmLib.AtomMath`
`rmatrixquaternion`	Function in module `mmLib.AtomMath`
`rmatrixu`	Function in module `mmLib.AtomMath`
`rmatrixz`	Function in module `mmLib.AtomMath`
`Rot_mX_mXY_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_mXY_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_mY_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_mY_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_mZ_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_mZ_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_Y_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_Y_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_Z_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_mX_Z_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_mXY_mX_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mXY_mX_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mXY_Y_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mXY_Y_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_mX_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_mX_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_mZ_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_mZ_X`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_X_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_X_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_XmY_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_XmY_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_Z_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_mY_Z_X`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_mX_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_mX_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_mY_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_mY_X`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_X_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_X_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_Y_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_mZ_Y_X`	Variable in module `mmLib.SpaceGroups`
`Rot_X_mY_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_X_mY_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_X_mZ_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_X_mZ_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_X_XmY_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_X_XmY_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_X_Y_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_X_Y_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_X_Z_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_X_Z_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_XmY_mY_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_XmY_mY_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_XmY_X_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_XmY_X_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_mX_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_mX_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_mXY_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_mXY_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_mZ_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_mZ_X`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_X_mZ`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_X_Z`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_Z_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_Y_Z_X`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_mX_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_mX_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_mY_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_mY_X`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_X_mY`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_X_Y`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_Y_mX`	Variable in module `mmLib.SpaceGroups`
`Rot_Z_Y_X`	Variable in module `mmLib.SpaceGroups`
`row_index_dict`	Method in class `mmLib.mmCIF.mmCIFTable`
`rquaternionu`	Function in module `mmLib.AtomMath`
`save`	Method in class `mmLib.TLS.TLSFile`
`save`	Method in class `mmLib.TLS.TLSFileFormat`
`save`	Method in class `mmLib.TLS.TLSFileFormatTLSOUT`
`save_file`	Method in class `mmLib.PDB.PDBFile`
`save_file`	Method in class `mmLib.mmCIF.mmCIFFile`
`save_supported`	Method in class `mmLib.TLS.TLSFileFormat`
`save_supported`	Method in class `mmLib.TLS.TLSFileFormatTLSOUT`
`SaveStructure`	Function in module `mmLib.FileIO`
`SCALE1`	Class in module `mmLib.PDB`
`SCALE2`	Class in module `mmLib.PDB`
`SCALE3`	Class in module `mmLib.PDB`
`SCALEn`	Class in module `mmLib.PDB`
`Segment`	Class in module `mmLib.Structure`
`SEQADV`	Class in module `mmLib.PDB`
`SEQRES`	Class in module `mmLib.PDB`
`set_atom_site_auth`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`set_atom_site_data_columns`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`set_atom_site_label`	Method in class `mmLib.mmCIFBuilder.mmCIFStructureBuilder`
`set_atom_site_row`	Method in class `mmLib.mmCIFBuilder.mmCIFFileBuilder`
`set_chain_id`	Method in class `mmLib.Structure.Atom`
`set_chain_id`	Method in class `mmLib.Structure.Chain`
`set_chain_id`	Method in class `mmLib.Structure.Fragment`
`set_chain_id`	Method in class `mmLib.Structure.Segment`
`set_columns`	Method in class `mmLib.mmCIF.mmCIFTable`
`set_default_alt_loc`	Method in class `mmLib.Structure.Fragment`
`set_default_alt_loc`	Method in class `mmLib.Structure.Structure`
`set_default_model`	Method in class `mmLib.Structure.Structure`
`set_deposition_date`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`set_entry_id`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`set_file_format`	Method in class `mmLib.TLS.TLSFile`
`set_fragment_id`	Method in class `mmLib.Structure.Atom`
`set_fragment_id`	Method in class `mmLib.Structure.Fragment`
`set_from_cifdb`	Method in class `mmLib.PDBBuilder.PDBFileBuilder`
`set_L`	Method in class `mmLib.TLS.TLSGroup`
`set_L`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_L_A`	Function in module `mmLib.TLS`
`set_L_deg2`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_model`	Method in class `mmLib.Structure.Structure`
`set_model_id`	Method in class `mmLib.Structure.Atom`
`set_model_id`	Method in class `mmLib.Structure.Fragment`
`set_model_id`	Method in class `mmLib.Structure.Model`
`set_model_id`	Method in class `mmLib.Structure.Segment`
`set_name`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_origin`	Method in class `mmLib.TLS.TLSGroup`
`set_origin`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_res_name`	Method in class `mmLib.Structure.Atom`
`set_res_name`	Method in class `mmLib.Structure.Fragment`
`set_S`	Method in class `mmLib.TLS.TLSGroup`
`set_S`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_S_deg`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_sequence`	Method in class `mmLib.Structure.Chain`
`set_sig_U`	Method in class `mmLib.Structure.Atom`
`set_single`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`set_struct_keywords`	Method in class `mmLib.mmCIFDB.mmCIFDB`
`set_style1`	Method in class `mmLib.TLS.GLTLSChain`
`set_T`	Method in class `mmLib.TLS.TLSGroup`
`set_T`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_tag`	Method in class `mmLib.mmCIF.mmCIFData`
`set_TLS_A`	Function in module `mmLib.TLS`
`set_TLS_b`	Function in module `mmLib.TLS`
`set_tls_group`	Method in class `mmLib.TLS.TLSGroupDesc`
`set_tls_groupXXX`	Method in class `mmLib.TLS.GLTLSGroup`
`set_TLSiso_A`	Function in module `mmLib.TLS`
`set_TLSiso_b`	Function in module `mmLib.TLS`
`set_U`	Method in class `mmLib.Structure.Atom`
`SetConsoleOutputObject`	Function in module `mmLib.ConsoleOutput`
`setdefault`	Method in class `__builtin__.dict`
`setmap`	Function in module `mmLib.PDBBuilder`
`setmapf`	Function in module `mmLib.PDBBuilder`
`setmapf_cif`	Function in module `mmLib.mmCIFBuilder`
`setmapi`	Function in module `mmLib.PDBBuilder`
`setmapi_cif`	Function in module `mmLib.mmCIFBuilder`
`setmaps`	Function in module `mmLib.PDBBuilder`
`setmaps_cif`	Function in module `mmLib.mmCIFBuilder`
`sg1`	Variable in module `mmLib.SpaceGroups`
`sg10`	Variable in module `mmLib.SpaceGroups`
`sg100`	Variable in module `mmLib.SpaceGroups`
`sg1003`	Variable in module `mmLib.SpaceGroups`
`sg1004`	Variable in module `mmLib.SpaceGroups`
`sg1005`	Variable in module `mmLib.SpaceGroups`
`sg1006`	Variable in module `mmLib.SpaceGroups`
`sg1007`	Variable in module `mmLib.SpaceGroups`
`sg1008`	Variable in module `mmLib.SpaceGroups`
`sg1009`	Variable in module `mmLib.SpaceGroups`
`sg101`	Variable in module `mmLib.SpaceGroups`
`sg1010`	Variable in module `mmLib.SpaceGroups`
`sg1011`	Variable in module `mmLib.SpaceGroups`
`sg1012`	Variable in module `mmLib.SpaceGroups`
`sg1013`	Variable in module `mmLib.SpaceGroups`
`sg1014`	Variable in module `mmLib.SpaceGroups`
`sg1015`	Variable in module `mmLib.SpaceGroups`
`sg1017`	Variable in module `mmLib.SpaceGroups`
`sg1018`	Variable in module `mmLib.SpaceGroups`
`sg102`	Variable in module `mmLib.SpaceGroups`
`sg1020`	Variable in module `mmLib.SpaceGroups`
`sg1021`	Variable in module `mmLib.SpaceGroups`
`sg1022`	Variable in module `mmLib.SpaceGroups`
`sg1023`	Variable in module `mmLib.SpaceGroups`
`sg103`	Variable in module `mmLib.SpaceGroups`
`sg104`	Variable in module `mmLib.SpaceGroups`
`sg105`	Variable in module `mmLib.SpaceGroups`
`sg1059`	Variable in module `mmLib.SpaceGroups`
`sg106`	Variable in module `mmLib.SpaceGroups`
`sg107`	Variable in module `mmLib.SpaceGroups`
`sg108`	Variable in module `mmLib.SpaceGroups`
`sg109`	Variable in module `mmLib.SpaceGroups`
`sg1094`	Variable in module `mmLib.SpaceGroups`
`sg11`	Variable in module `mmLib.SpaceGroups`
`sg110`	Variable in module `mmLib.SpaceGroups`
`sg111`	Variable in module `mmLib.SpaceGroups`
`sg112`	Variable in module `mmLib.SpaceGroups`
`sg113`	Variable in module `mmLib.SpaceGroups`
`sg114`	Variable in module `mmLib.SpaceGroups`
`sg1146`	Variable in module `mmLib.SpaceGroups`
`sg1148`	Variable in module `mmLib.SpaceGroups`
`sg115`	Variable in module `mmLib.SpaceGroups`
`sg1155`	Variable in module `mmLib.SpaceGroups`
`sg116`	Variable in module `mmLib.SpaceGroups`
`sg1160`	Variable in module `mmLib.SpaceGroups`
`sg1161`	Variable in module `mmLib.SpaceGroups`
`sg1166`	Variable in module `mmLib.SpaceGroups`
`sg1167`	Variable in module `mmLib.SpaceGroups`
`sg117`	Variable in module `mmLib.SpaceGroups`
`sg118`	Variable in module `mmLib.SpaceGroups`
`sg119`	Variable in module `mmLib.SpaceGroups`
`sg1197`	Variable in module `mmLib.SpaceGroups`
`sg12`	Variable in module `mmLib.SpaceGroups`
`sg120`	Variable in module `mmLib.SpaceGroups`
`sg121`	Variable in module `mmLib.SpaceGroups`
`sg122`	Variable in module `mmLib.SpaceGroups`
`sg123`	Variable in module `mmLib.SpaceGroups`
`sg124`	Variable in module `mmLib.SpaceGroups`
`sg125`	Variable in module `mmLib.SpaceGroups`
`sg126`	Variable in module `mmLib.SpaceGroups`
`sg127`	Variable in module `mmLib.SpaceGroups`
`sg128`	Variable in module `mmLib.SpaceGroups`
`sg129`	Variable in module `mmLib.SpaceGroups`
`sg13`	Variable in module `mmLib.SpaceGroups`
`sg130`	Variable in module `mmLib.SpaceGroups`
`sg131`	Variable in module `mmLib.SpaceGroups`
`sg132`	Variable in module `mmLib.SpaceGroups`
`sg133`	Variable in module `mmLib.SpaceGroups`
`sg134`	Variable in module `mmLib.SpaceGroups`
`sg135`	Variable in module `mmLib.SpaceGroups`
`sg136`	Variable in module `mmLib.SpaceGroups`
`sg137`	Variable in module `mmLib.SpaceGroups`
`sg138`	Variable in module `mmLib.SpaceGroups`
`sg139`	Variable in module `mmLib.SpaceGroups`
`sg14`	Variable in module `mmLib.SpaceGroups`
`sg140`	Variable in module `mmLib.SpaceGroups`
`sg141`	Variable in module `mmLib.SpaceGroups`
`sg142`	Variable in module `mmLib.SpaceGroups`
`sg143`	Variable in module `mmLib.SpaceGroups`
`sg144`	Variable in module `mmLib.SpaceGroups`
`sg145`	Variable in module `mmLib.SpaceGroups`
`sg146`	Variable in module `mmLib.SpaceGroups`
`sg147`	Variable in module `mmLib.SpaceGroups`
`sg148`	Variable in module `mmLib.SpaceGroups`
`sg149`	Variable in module `mmLib.SpaceGroups`
`sg15`	Variable in module `mmLib.SpaceGroups`
`sg150`	Variable in module `mmLib.SpaceGroups`
`sg151`	Variable in module `mmLib.SpaceGroups`
`sg152`	Variable in module `mmLib.SpaceGroups`
`sg153`	Variable in module `mmLib.SpaceGroups`
`sg154`	Variable in module `mmLib.SpaceGroups`
`sg155`	Variable in module `mmLib.SpaceGroups`
`sg156`	Variable in module `mmLib.SpaceGroups`
`sg157`	Variable in module `mmLib.SpaceGroups`
`sg158`	Variable in module `mmLib.SpaceGroups`
`sg159`	Variable in module `mmLib.SpaceGroups`
`sg16`	Variable in module `mmLib.SpaceGroups`
`sg160`	Variable in module `mmLib.SpaceGroups`
`sg161`	Variable in module `mmLib.SpaceGroups`
`sg162`	Variable in module `mmLib.SpaceGroups`
`sg163`	Variable in module `mmLib.SpaceGroups`
`sg164`	Variable in module `mmLib.SpaceGroups`
`sg165`	Variable in module `mmLib.SpaceGroups`
`sg166`	Variable in module `mmLib.SpaceGroups`
`sg167`	Variable in module `mmLib.SpaceGroups`
`sg168`	Variable in module `mmLib.SpaceGroups`
`sg169`	Variable in module `mmLib.SpaceGroups`
`sg17`	Variable in module `mmLib.SpaceGroups`
`sg170`	Variable in module `mmLib.SpaceGroups`
`sg171`	Variable in module `mmLib.SpaceGroups`
`sg172`	Variable in module `mmLib.SpaceGroups`
`sg173`	Variable in module `mmLib.SpaceGroups`
`sg174`	Variable in module `mmLib.SpaceGroups`
`sg175`	Variable in module `mmLib.SpaceGroups`
`sg176`	Variable in module `mmLib.SpaceGroups`
`sg177`	Variable in module `mmLib.SpaceGroups`
`sg178`	Variable in module `mmLib.SpaceGroups`
`sg179`	Variable in module `mmLib.SpaceGroups`
`sg18`	Variable in module `mmLib.SpaceGroups`
`sg180`	Variable in module `mmLib.SpaceGroups`
`sg181`	Variable in module `mmLib.SpaceGroups`
`sg182`	Variable in module `mmLib.SpaceGroups`
`sg183`	Variable in module `mmLib.SpaceGroups`
`sg184`	Variable in module `mmLib.SpaceGroups`
`sg185`	Variable in module `mmLib.SpaceGroups`
`sg186`	Variable in module `mmLib.SpaceGroups`
`sg187`	Variable in module `mmLib.SpaceGroups`
`sg188`	Variable in module `mmLib.SpaceGroups`
`sg189`	Variable in module `mmLib.SpaceGroups`
`sg19`	Variable in module `mmLib.SpaceGroups`
`sg190`	Variable in module `mmLib.SpaceGroups`
`sg191`	Variable in module `mmLib.SpaceGroups`
`sg192`	Variable in module `mmLib.SpaceGroups`
`sg193`	Variable in module `mmLib.SpaceGroups`
`sg194`	Variable in module `mmLib.SpaceGroups`
`sg195`	Variable in module `mmLib.SpaceGroups`
`sg196`	Variable in module `mmLib.SpaceGroups`
`sg197`	Variable in module `mmLib.SpaceGroups`
`sg198`	Variable in module `mmLib.SpaceGroups`
`sg199`	Variable in module `mmLib.SpaceGroups`
`sg2`	Variable in module `mmLib.SpaceGroups`
`sg20`	Variable in module `mmLib.SpaceGroups`
`sg200`	Variable in module `mmLib.SpaceGroups`
`sg2005`	Variable in module `mmLib.SpaceGroups`
`sg201`	Variable in module `mmLib.SpaceGroups`
`sg2017`	Variable in module `mmLib.SpaceGroups`
`sg2018`	Variable in module `mmLib.SpaceGroups`
`sg202`	Variable in module `mmLib.SpaceGroups`
`sg203`	Variable in module `mmLib.SpaceGroups`
`sg204`	Variable in module `mmLib.SpaceGroups`
`sg205`	Variable in module `mmLib.SpaceGroups`
`sg206`	Variable in module `mmLib.SpaceGroups`
`sg207`	Variable in module `mmLib.SpaceGroups`
`sg208`	Variable in module `mmLib.SpaceGroups`
`sg209`	Variable in module `mmLib.SpaceGroups`
`sg21`	Variable in module `mmLib.SpaceGroups`
`sg210`	Variable in module `mmLib.SpaceGroups`
`sg211`	Variable in module `mmLib.SpaceGroups`
`sg212`	Variable in module `mmLib.SpaceGroups`
`sg213`	Variable in module `mmLib.SpaceGroups`
`sg214`	Variable in module `mmLib.SpaceGroups`
`sg215`	Variable in module `mmLib.SpaceGroups`
`sg216`	Variable in module `mmLib.SpaceGroups`
`sg217`	Variable in module `mmLib.SpaceGroups`
`sg218`	Variable in module `mmLib.SpaceGroups`
`sg219`	Variable in module `mmLib.SpaceGroups`
`sg22`	Variable in module `mmLib.SpaceGroups`
`sg220`	Variable in module `mmLib.SpaceGroups`
`sg221`	Variable in module `mmLib.SpaceGroups`
`sg222`	Variable in module `mmLib.SpaceGroups`
`sg223`	Variable in module `mmLib.SpaceGroups`
`sg224`	Variable in module `mmLib.SpaceGroups`
`sg225`	Variable in module `mmLib.SpaceGroups`
`sg226`	Variable in module `mmLib.SpaceGroups`
`sg227`	Variable in module `mmLib.SpaceGroups`
`sg228`	Variable in module `mmLib.SpaceGroups`
`sg229`	Variable in module `mmLib.SpaceGroups`
`sg23`	Variable in module `mmLib.SpaceGroups`
`sg230`	Variable in module `mmLib.SpaceGroups`
`sg24`	Variable in module `mmLib.SpaceGroups`
`sg25`	Variable in module `mmLib.SpaceGroups`
`sg26`	Variable in module `mmLib.SpaceGroups`
`sg27`	Variable in module `mmLib.SpaceGroups`
`sg28`	Variable in module `mmLib.SpaceGroups`
`sg29`	Variable in module `mmLib.SpaceGroups`
`sg3`	Variable in module `mmLib.SpaceGroups`
`sg30`	Variable in module `mmLib.SpaceGroups`
`sg3004`	Variable in module `mmLib.SpaceGroups`
`sg3005`	Variable in module `mmLib.SpaceGroups`
`sg3018`	Variable in module `mmLib.SpaceGroups`
`sg31`	Variable in module `mmLib.SpaceGroups`
`sg32`	Variable in module `mmLib.SpaceGroups`
`sg33`	Variable in module `mmLib.SpaceGroups`
`sg34`	Variable in module `mmLib.SpaceGroups`
`sg35`	Variable in module `mmLib.SpaceGroups`
`sg36`	Variable in module `mmLib.SpaceGroups`
`sg37`	Variable in module `mmLib.SpaceGroups`
`sg38`	Variable in module `mmLib.SpaceGroups`
`sg39`	Variable in module `mmLib.SpaceGroups`
`sg4`	Variable in module `mmLib.SpaceGroups`
`sg40`	Variable in module `mmLib.SpaceGroups`
`sg41`	Variable in module `mmLib.SpaceGroups`
`sg42`	Variable in module `mmLib.SpaceGroups`
`sg43`	Variable in module `mmLib.SpaceGroups`
`sg44`	Variable in module `mmLib.SpaceGroups`
`sg45`	Variable in module `mmLib.SpaceGroups`
`sg46`	Variable in module `mmLib.SpaceGroups`
`sg47`	Variable in module `mmLib.SpaceGroups`
`sg48`	Variable in module `mmLib.SpaceGroups`
`sg49`	Variable in module `mmLib.SpaceGroups`
`sg5`	Variable in module `mmLib.SpaceGroups`
`sg50`	Variable in module `mmLib.SpaceGroups`
`sg51`	Variable in module `mmLib.SpaceGroups`
`sg52`	Variable in module `mmLib.SpaceGroups`
`sg53`	Variable in module `mmLib.SpaceGroups`
`sg54`	Variable in module `mmLib.SpaceGroups`
`sg55`	Variable in module `mmLib.SpaceGroups`
`sg56`	Variable in module `mmLib.SpaceGroups`
`sg57`	Variable in module `mmLib.SpaceGroups`
`sg58`	Variable in module `mmLib.SpaceGroups`
`sg59`	Variable in module `mmLib.SpaceGroups`
`sg6`	Variable in module `mmLib.SpaceGroups`
`sg60`	Variable in module `mmLib.SpaceGroups`
`sg61`	Variable in module `mmLib.SpaceGroups`
`sg62`	Variable in module `mmLib.SpaceGroups`
`sg63`	Variable in module `mmLib.SpaceGroups`
`sg64`	Variable in module `mmLib.SpaceGroups`
`sg65`	Variable in module `mmLib.SpaceGroups`
`sg66`	Variable in module `mmLib.SpaceGroups`
`sg67`	Variable in module `mmLib.SpaceGroups`
`sg68`	Variable in module `mmLib.SpaceGroups`
`sg69`	Variable in module `mmLib.SpaceGroups`
`sg7`	Variable in module `mmLib.SpaceGroups`
`sg70`	Variable in module `mmLib.SpaceGroups`
`sg71`	Variable in module `mmLib.SpaceGroups`
`sg72`	Variable in module `mmLib.SpaceGroups`
`sg73`	Variable in module `mmLib.SpaceGroups`
`sg74`	Variable in module `mmLib.SpaceGroups`
`sg75`	Variable in module `mmLib.SpaceGroups`
`sg76`	Variable in module `mmLib.SpaceGroups`
`sg77`	Variable in module `mmLib.SpaceGroups`
`sg78`	Variable in module `mmLib.SpaceGroups`
`sg79`	Variable in module `mmLib.SpaceGroups`
`sg8`	Variable in module `mmLib.SpaceGroups`
`sg80`	Variable in module `mmLib.SpaceGroups`
`sg81`	Variable in module `mmLib.SpaceGroups`
`sg82`	Variable in module `mmLib.SpaceGroups`
`sg83`	Variable in module `mmLib.SpaceGroups`
`sg84`	Variable in module `mmLib.SpaceGroups`
`sg85`	Variable in module `mmLib.SpaceGroups`
`sg86`	Variable in module `mmLib.SpaceGroups`
`sg87`	Variable in module `mmLib.SpaceGroups`
`sg88`	Variable in module `mmLib.SpaceGroups`
`sg89`	Variable in module `mmLib.SpaceGroups`
`sg9`	Variable in module `mmLib.SpaceGroups`
`sg90`	Variable in module `mmLib.SpaceGroups`
`sg91`	Variable in module `mmLib.SpaceGroups`
`sg92`	Variable in module `mmLib.SpaceGroups`
`sg93`	Variable in module `mmLib.SpaceGroups`
`sg94`	Variable in module `mmLib.SpaceGroups`
`sg95`	Variable in module `mmLib.SpaceGroups`
`sg96`	Variable in module `mmLib.SpaceGroups`
`sg97`	Variable in module `mmLib.SpaceGroups`
`sg98`	Variable in module `mmLib.SpaceGroups`
`sg99`	Variable in module `mmLib.SpaceGroups`
`SHEET`	Class in module `mmLib.PDB`
`shift_COR`	Method in class `mmLib.TLS.TLSGroup`
`SIGATM`	Class in module `mmLib.PDB`
`SIGUIJ`	Class in module `mmLib.PDB`
`SITE`	Class in module `mmLib.PDB`
`Site`	Class in module `mmLib.Structure`
`SLTBRG`	Class in module `mmLib.PDB`
`solve_TLS_Ab`	Function in module `mmLib.TLS`
`sort`	Method in class `__builtin__.list`
`sort`	Method in class `mmLib.Structure.Model`
`sort`	Method in class `mmLib.Structure.Segment`
`sort`	Method in class `mmLib.Structure.Structure`
`SOURCE`	Class in module `mmLib.PDB`
`SpaceGroupList`	Variable in module `mmLib.SpaceGroups`
`SpaceGroups`	Module in package `mmLib`
`split_tag`	Method in class `mmLib.mmCIF.mmCIFData`
`split_token`	Method in class `mmLib.mmCIF.mmCIFFileParser`
`SPRSDE`	Class in module `mmLib.PDB`
`SSBOND`	Class in module `mmLib.PDB`
`str_old`	Method in class `mmLib.TLS.TLSGroup`
`Strand`	Class in module `mmLib.Structure`
`strRT`	Function in module `mmLib.UnitCell`
`Structure`	Module in package `mmLib`
`Structure`	Class in module `mmLib.Structure`
`StructureBuilder`	Module in package `mmLib`
`StructureBuilder`	Class in module `mmLib.StructureBuilder`
`StructureBuilderError`	Class in module `mmLib.StructureBuilder`
`StructureError`	Class in module `mmLib.Structure`
`SuperimposeAtoms`	Function in module `mmLib.Superposition`
`SuperimposeAtomsOutlierRejection`	Function in module `mmLib.Superposition`
`SuperimposePoints`	Function in module `mmLib.Superposition`
`SuperimposePositions`	Function in module `mmLib.Superposition`
`Superposition`	Module in package `mmLib`
`SuperpositionResults`	Class in module `mmLib.Superposition`
`syntax_error`	Method in class `mmLib.mmCIF.mmCIFFileParser`
`table`	Variable in class `mmLib.mmCIF.mmCIFRow`
`TeeWrite`	Class in module `mmLib.R3DDriver`
`TER`	Class in module `mmLib.PDB`
`test_module`	Function in module `mmLib.AtomMath`
`test_module`	Function in module `mmLib.FileIO`
`test_module`	Function in module `mmLib.GeometryDict`
`test_module`	Function in module `mmLib.Library`
`test_module`	Function in module `mmLib.PDB`
`test_module`	Function in module `mmLib.Structure`
`test_module`	Function in module `mmLib.Superposition`
`test_module`	Function in module `mmLib.TLS`
`test_module`	Function in module `mmLib.UnitCell`
`test_module`	Function in module `mmLib.mmCIF`
`TITLE`	Class in module `mmLib.PDB`
`TLS`	Module in package `mmLib`
`tls_update_cb`	Method in class `mmLib.TLS.GLTLSGroup`
`TLSError`	Class in module `mmLib.TLS`
`TLSFile`	Class in module `mmLib.TLS`
`TLSFileFormat`	Class in module `mmLib.TLS`
`TLSFileFormatError`	Class in module `mmLib.TLS`
`TLSFileFormatPDB`	Class in module `mmLib.TLS`
`TLSFileFormatTLSOUT`	Class in module `mmLib.TLS`
`TLSGroup`	Class in module `mmLib.TLS`
`TLSGroupDesc`	Class in module `mmLib.TLS`
`tlsout_regex_dict`	Variable in class `mmLib.TLS.TLSFileFormatTLSOUT`
`tlsout_tls_desc`	Method in class `mmLib.TLS.TLSFileFormatTLSOUT`
`TLSStructureAnalysis`	Class in module `mmLib.TLS`
`Tr_0_0_0`	Variable in module `mmLib.SpaceGroups`
`Tr_0_0_12`	Variable in module `mmLib.SpaceGroups`
`Tr_0_0_13`	Variable in module `mmLib.SpaceGroups`
`Tr_0_0_14`	Variable in module `mmLib.SpaceGroups`
`Tr_0_0_16`	Variable in module `mmLib.SpaceGroups`
`Tr_0_0_23`	Variable in module `mmLib.SpaceGroups`
`Tr_0_0_34`	Variable in module `mmLib.SpaceGroups`
`Tr_0_0_56`	Variable in module `mmLib.SpaceGroups`
`Tr_0_12_0`	Variable in module `mmLib.SpaceGroups`
`Tr_0_12_12`	Variable in module `mmLib.SpaceGroups`
`Tr_0_12_14`	Variable in module `mmLib.SpaceGroups`
`Tr_0_12_34`	Variable in module `mmLib.SpaceGroups`
`Tr_12_0_0`	Variable in module `mmLib.SpaceGroups`
`Tr_12_0_12`	Variable in module `mmLib.SpaceGroups`
`Tr_12_0_14`	Variable in module `mmLib.SpaceGroups`
`Tr_12_0_34`	Variable in module `mmLib.SpaceGroups`
`Tr_12_12_0`	Variable in module `mmLib.SpaceGroups`
`Tr_12_12_12`	Variable in module `mmLib.SpaceGroups`
`Tr_12_12_14`	Variable in module `mmLib.SpaceGroups`
`Tr_12_12_34`	Variable in module `mmLib.SpaceGroups`
`Tr_13_23_16`	Variable in module `mmLib.SpaceGroups`
`Tr_13_23_23`	Variable in module `mmLib.SpaceGroups`
`Tr_14_14_14`	Variable in module `mmLib.SpaceGroups`
`Tr_14_14_34`	Variable in module `mmLib.SpaceGroups`
`Tr_14_34_14`	Variable in module `mmLib.SpaceGroups`
`Tr_14_34_34`	Variable in module `mmLib.SpaceGroups`
`Tr_23_13_13`	Variable in module `mmLib.SpaceGroups`
`Tr_23_13_56`	Variable in module `mmLib.SpaceGroups`
`Tr_34_14_14`	Variable in module `mmLib.SpaceGroups`
`Tr_34_14_34`	Variable in module `mmLib.SpaceGroups`
`Tr_34_34_14`	Variable in module `mmLib.SpaceGroups`
`Tr_34_34_34`	Variable in module `mmLib.SpaceGroups`
`transform`	Method in class `mmLib.Superposition.SuperpositionResults`
`TURN`	Class in module `mmLib.PDB`
`TVECT`	Class in module `mmLib.PDB`
`type`	Class in module `__builtin__`
`UnitCell`	Module in package `mmLib`
`UnitCell`	Class in module `mmLib.UnitCell`
`update`	Method in class `__builtin__.dict`
`update`	Method in class `mmLib.Viewer.GLPropertyDict`
`update_cb`	Method in class `mmLib.TLS.GLTLSChain`
`update_time`	Method in class `mmLib.TLS.GLTLSGroup`
`values`	Method in class `__builtin__.dict`
`Viewer`	Module in package `mmLib`
`warning`	Method in class `mmLib.ConsoleOutput.ConesoleOutput`
`warning`	Function in module `mmLib.ConsoleOutput`
`write`	Method in class `mmLib.PDB.PDBRecord`
`write`	Method in class `mmLib.R3DDriver.TeeWrite`
`write`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`write_cif_data`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`write_file`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`write_mstring`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`write_multi_row_table`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`write_one_row_table`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`writeln`	Method in class `mmLib.mmCIF.mmCIFFileWriter`
`XYZDict`	Class in module `mmLib.GeometryDict`
`ZCat`	Class in module `mmLib.FileIO`

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