mmLib.PDB.HET

Package mmLib :: Module PDB :: Class HET

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Type HET

object --+        
         |        
      dict --+    
             |    
     PDBRecord --+
                 |
                HET

The HET records are used to describe non-standard residues, such as
prosthetic groups, inhibitors, solvent molecules, and ions for
which coordinates are supplied. Groups are considered HET if they are: 
- not one of the standard amino acids, and 
- not one of the nucleic acids (C, G, A, T, U, and I), and 
- not one of the modified versions of nucleic acids (+C, +G, +A,
+T, +U, and +I), and 
- not an unknown amino acid or nucleic acid where UNK is used to
indicate the unknown residue name. 
Het records also describe heterogens for which the chemical identity
is unknown, in which case the group is assigned the hetID UNK.

Method Summary
Inherited from PDBRecord
	`__str__(self)`
	`read(self, line)` Read the PDB record line and convert the fields to the appropriate dictionary values for this class.
	`reccat(self, rec_list, field)` Return the concatenation of field in all the records in rec_list.
	`reccat_dictlist(self, rec_list, field, master_key)`
	`reccat_list(self, rec_list, field, sep)` Call reccat, then split the result by the seperator.
	`reccat_multi(self, rec_list, primary_key, translations)` Create a list of dictionaries from a list of records.
	`reccat_tuplelist(self, rec_list, field, sep1, sep2)` Call reccat_list with sep1 as the list seperator, then split the items into tuples by sep2.
	`write(self)` Return a properly formed PDB record string from the instance dictionary values.
Inherited from dict
	`__init__(...)` x.__init__(...) initializes x; see x.__class__.__doc__ for signature
	`__cmp__(x, y)` x.__cmp__(y) <==> cmp(x,y)
	`__contains__(D, k)` D.__contains__(k) -> True if D has a key k, else False
	`__delitem__(x, y)` x.__delitem__(y) <==> del x[y]
	`__eq__(x, y)` x.__eq__(y) <==> x==y
	`__ge__(x, y)` x.__ge__(y) <==> x>=y
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name
	`__getitem__(x, y)` x.__getitem__(y) <==> x[y]
	`__gt__(x, y)` x.__gt__(y) <==> x>y
	`__hash__(x)` x.__hash__() <==> hash(x)
	`__iter__(x)` x.__iter__() <==> iter(x)
	`__le__(x, y)` x.__le__(y) <==> x<=y
	`__len__(x)` x.__len__() <==> len(x)
	`__lt__(x, y)` x.__lt__(y) <==> x<y
	`__ne__(x, y)` x.__ne__(y) <==> x!=y
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T
	`__repr__(x)` x.__repr__() <==> repr(x)
	`__setitem__(x, i, y)` x.__setitem__(i, y) <==> x[i]=y
	`clear(D)` D.clear() -> None.
	`copy(D)` D.copy() -> a shallow copy of D
	`get(D, k, d)` D.get(k[,d]) -> D[k] if k in D, else d.
	`has_key(D, k)` D.has_key(k) -> True if D has a key k, else False
	`items(D)` D.items() -> list of D's (key, value) pairs, as 2-tuples
	`iteritems(D)` D.iteritems() -> an iterator over the (key, value) items of D
	`iterkeys(D)` D.iterkeys() -> an iterator over the keys of D
	`itervalues(D)` D.itervalues() -> an iterator over the values of D
	`keys(D)` D.keys() -> list of D's keys
	`pop(D, k, d)` If key is not found, d is returned if given, otherwise KeyError is raised
	`popitem(D)` 2-tuple; but raise KeyError if D is empty
	`setdefault(D, k, d)` D.setdefault(k[,d]) -> D.get(k,d), also set D[k]=d if k not in D
	`update(...)` D.update(E, **F) -> None.
	`values(D)` D.values() -> list of D's values
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name
	`__reduce__(...)` helper for pickle
	`__reduce_ex__(...)` helper for pickle
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value
Inherited from type
	`fromkeys(dict, S, v)` v defaults to None.

Class Variable Summary
`list`	`__slots__` = `[]`

Class Variable Details

slots

Type:: list
Value:: []

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Type HET

__slots__

slots