Package mmLib :: Module PDBBuilder
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Module mmLib.PDBBuilder

Convert a Structure object to its PDBFile description.
Classes
PDBFileBuilder Builds a PDBFile object from a Structure object.
PDBStructureBuilder Builds a new Structure object by loading a PDB file.

Function Summary
  setmap(smap, skey, dmap, dkey)
Sets the dmap/dkey with the value from smap/skey/
  setmapf(smap, skey, dmap, dkey)
Sets the dmap/dkey with the float value from smap/skey or default if not smap/skey value is found.
  setmapi(smap, skey, dmap, dkey)
Sets the dmap/dkey with the integer value from smap/skey.
  setmaps(smap, skey, dmap, dkey)
Sets the dmap/dkey with the string value from smap/skey/

Variable Summary
list HELIX_CLASS_LIST = [('HELIX_P', -1), ('HELX_OT_P', -1), ...

Function Details

setmap(smap, skey, dmap, dkey)

Sets the dmap/dkey with the value from smap/skey/

setmapf(smap, skey, dmap, dkey)

Sets the dmap/dkey with the float value from smap/skey or default if not smap/skey value is found.

setmapi(smap, skey, dmap, dkey)

Sets the dmap/dkey with the integer value from smap/skey.

setmaps(smap, skey, dmap, dkey)

Sets the dmap/dkey with the string value from smap/skey/

Variable Details

HELIX_CLASS_LIST

Type:
list
Value:
[('HELIX_P', -1),
 ('HELX_OT_P', -1),
 ('HELX_RH_P', -1),
 ('HELX_RH_OT_P', -1),
 ('HELX_RH_AL_P', 1),
 ('HELX_RH_GA_P', 4),
 ('HELX_RH_OM_P', 2),
 ('HELX_RH_PI_P', 3),
...                                                                    

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