mmLib.PDB.DBREF

Package mmLib :: Module PDB :: Class DBREF

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Type DBREF

object --+        
         |        
      dict --+    
             |    
     PDBRecord --+
                 |
                DBREF

The DBREF record provides cross-reference links between PDB sequences and the corresponding database entry or entries. A cross reference to the sequence database is mandatory for each peptide chain with a length greater than ten (10) residues. For nucleic acid entries a DBREF record pointing to the Nucleic Acid Database (NDB) is mandatory when the corresponding entry exists in NDB.

Method Summary
Inherited from PDBRecord
	`__str__(self)`
	`read(self, line)` Read the PDB record line and convert the fields to the appropriate dictionary values for this class.
	`reccat(self, rec_list, field)` Return the concatenation of field in all the records in rec_list.
	`reccat_dictlist(self, rec_list, field, master_key)`
	`reccat_list(self, rec_list, field, sep)` Call reccat, then split the result by the seperator.
	`reccat_multi(self, rec_list, primary_key, translations)` Create a list of dictionaries from a list of records.
	`reccat_tuplelist(self, rec_list, field, sep1, sep2)` Call reccat_list with sep1 as the list seperator, then split the items into tuples by sep2.
	`write(self)` Return a properly formed PDB record string from the instance dictionary values.
Inherited from dict
	`__init__(...)` x.__init__(...) initializes x; see x.__class__.__doc__ for signature
	`__cmp__(x, y)` x.__cmp__(y) <==> cmp(x,y)
	`__contains__(D, k)` D.__contains__(k) -> True if D has a key k, else False
	`__delitem__(x, y)` x.__delitem__(y) <==> del x[y]
	`__eq__(x, y)` x.__eq__(y) <==> x==y
	`__ge__(x, y)` x.__ge__(y) <==> x>=y
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name
	`__getitem__(x, y)` x.__getitem__(y) <==> x[y]
	`__gt__(x, y)` x.__gt__(y) <==> x>y
	`__hash__(x)` x.__hash__() <==> hash(x)
	`__iter__(x)` x.__iter__() <==> iter(x)
	`__le__(x, y)` x.__le__(y) <==> x<=y
	`__len__(x)` x.__len__() <==> len(x)
	`__lt__(x, y)` x.__lt__(y) <==> x<y
	`__ne__(x, y)` x.__ne__(y) <==> x!=y
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T
	`__repr__(x)` x.__repr__() <==> repr(x)
	`__setitem__(x, i, y)` x.__setitem__(i, y) <==> x[i]=y
	`clear(D)` D.clear() -> None.
	`copy(D)` D.copy() -> a shallow copy of D
	`get(D, k, d)` D.get(k[,d]) -> D[k] if k in D, else d.
	`has_key(D, k)` D.has_key(k) -> True if D has a key k, else False
	`items(D)` D.items() -> list of D's (key, value) pairs, as 2-tuples
	`iteritems(D)` D.iteritems() -> an iterator over the (key, value) items of D
	`iterkeys(D)` D.iterkeys() -> an iterator over the keys of D
	`itervalues(D)` D.itervalues() -> an iterator over the values of D
	`keys(D)` D.keys() -> list of D's keys
	`pop(D, k, d)` If key is not found, d is returned if given, otherwise KeyError is raised
	`popitem(D)` 2-tuple; but raise KeyError if D is empty
	`setdefault(D, k, d)` D.setdefault(k[,d]) -> D.get(k,d), also set D[k]=d if k not in D
	`update(...)` D.update(E, **F) -> None.
	`values(D)` D.values() -> list of D's values
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name
	`__reduce__(...)` helper for pickle
	`__reduce_ex__(...)` helper for pickle
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value
Inherited from type
	`fromkeys(dict, S, v)` v defaults to None.

Class Variable Summary
`list`	`__slots__` = `[]`

Class Variable Details

slots

Type:: list
Value:: []

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Type DBREF

__slots__

slots