mmLib.TLS.TLSStructureAnalysis

Package mmLib :: Module TLS :: Class TLSStructureAnalysis

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Type TLSStructureAnalysis

object --+
         |
        TLSStructureAnalysis

Algorithm object for rigid body searches on Structure objects.

Method Summary
	`__init__(self, struct)`
	`atom_filter(self, atm, **args)`
	`fit_TLS_segments(self, **args)` Returns the list iterated by iter_fit_TLS_segments
	`iter_fit_TLS_segments(self, **args)` Run the algorithm to fit TLS parameters to segments of the structure.
	`iter_segments(self, chain, seg_len)` This iteratar yields a series of Segment objects of width seg_len.
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name
	`__hash__(x)` x.__hash__() <==> hash(x)
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T
	`__reduce__(...)` helper for pickle
	`__reduce_ex__(...)` helper for pickle
	`__repr__(x)` x.__repr__() <==> repr(x)
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value
	`__str__(x)` x.__str__() <==> str(x)

Method Details

fit_TLS_segments(self, **args)

Returns the list iterated by iter_fit_TLS_segments

iter_fit_TLS_segments(self, **args)

Run the algorithm to fit TLS parameters to segments of the structure. This method has many options, which are outlined in the source code for the method. This returns a list of dictionaries containing statistics on each of the fit TLS groups, the residues involved, and the TLS object itself.

iter_segments(self, chain, seg_len)

This iteratar yields a series of Segment objects of width seg_len. The start at the beginning Fragment of the Chain, and the start point walks the chain one Fragment at a time until there are not enough Fragments left to cut Segments of seg_width.

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