| Method Summary |
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__init__(self,
site_id,
fragment_list,
**args)
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__str__(self)
|
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add_fragment(self,
fragment_dict,
fragment)
Adds a Fragment object to the fragment_dict and updates the values in
fragment_dict to reflect the new Fragment object. |
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construct_fragments(self)
Using the site fragment descriptions, finds the Fragment objects in
the parent Model. |
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get_model(self)
Returns the parent Model object. |
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get_structure(self)
Returns the parent Structure object. |
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iter_all_atoms(self)
Iterates all Atom objects plus any in non-default alt_loc
conformations. |
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iter_atoms(self)
Iterates all Atom objects. |
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iter_fragments(self)
Iterates child Fragment objects. |
| Inherited from object |
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__delattr__(...)
x.__delattr__('name') <==> del x.name |
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__getattribute__(...)
x.__getattribute__('name') <==> x.name |
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__hash__(x)
x.__hash__() <==> hash(x) |
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__new__(T,
S,
...)
T.__new__(S, ...) -> a new object with type S, a subtype of T |
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__reduce__(...)
helper for pickle |
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__reduce_ex__(...)
helper for pickle |
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__repr__(x)
x.__repr__() <==> repr(x) |
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__setattr__(...)
x.__setattr__('name', value) <==> x.name = value |