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Identifier Index
__add__ Method in class __builtin__.list
object Class in module __builtin__
__bases__ Variable in class __builtin__.type
__basicsize__ Variable in class __builtin__.type
__call__ Method in class __builtin__.type
__call_processor Method in class mmLib.PDB.RecordProcessor
__call_processor_multi Method in class mmLib.PDB.RecordProcessor
type Class in module __builtin__
__cmp__ Method in class __builtin__.dict
__cmp__ Method in class __builtin__.type
__contains__ Method in class __builtin__.dict
__contains__ Method in class __builtin__.list
__contains__ Method in class mmLib.Structure.Atom
__contains__ Method in class mmLib.Structure.Fragment
__contains__ Method in class mmLib.Structure.Model
__contains__ Method in class mmLib.Structure.Segment
__contains__ Method in class mmLib.Structure.Structure
__contains__ Method in class mmLib.mmCIF.mmCIFRow
__deepcopy__ Method in class mmLib.Structure.Altloc
__deepcopy__ Method in class mmLib.Structure.AminoAcidResidue
__deepcopy__ Method in class mmLib.Structure.Atom
__deepcopy__ Method in class mmLib.Structure.Bond
__deepcopy__ Method in class mmLib.Structure.Chain
__deepcopy__ Method in class mmLib.Structure.Fragment
__deepcopy__ Method in class mmLib.Structure.Model
__deepcopy__ Method in class mmLib.Structure.NucleicAcidResidue
__deepcopy__ Method in class mmLib.Structure.Segment
__deepcopy__ Method in class mmLib.Structure.Structure
__deepcopy__ Method in class mmLib.mmCIF.mmCIFData
__deepcopy__ Method in class mmLib.mmCIF.mmCIFFile
__deepcopy__ Method in class mmLib.mmCIF.mmCIFRow
__deepcopy__ Method in class mmLib.mmCIF.mmCIFTable
__delattr__ Method in class __builtin__.object
__delattr__ Method in class __builtin__.type
__delitem__ Method in class __builtin__.dict
__delitem__ Method in class __builtin__.list
__delitem__ Method in class mmLib.mmCIF.mmCIFData
__delitem__ Method in class mmLib.mmCIF.mmCIFFile
__delitem__ Method in class mmLib.mmCIF.mmCIFRow
__delitem__ Method in class mmLib.mmCIF.mmCIFTable
__delslice__ Method in class __builtin__.list
__dictoffset__ Variable in class __builtin__.type
__eq__ Method in class __builtin__.dict
__eq__ Method in class __builtin__.list
__eq__ Method in class mmLib.Structure.FragmentID
__eq__ Method in class mmLib.mmCIF.mmCIFData
__eq__ Method in class mmLib.mmCIF.mmCIFFile
__eq__ Method in class mmLib.mmCIF.mmCIFRow
__eq__ Method in class mmLib.mmCIF.mmCIFTable
__flags__ Variable in class __builtin__.type
__ge__ Method in class __builtin__.dict
__ge__ Method in class __builtin__.list
__ge__ Method in class mmLib.Structure.Atom
__ge__ Method in class mmLib.Structure.Fragment
__ge__ Method in class mmLib.Structure.FragmentID
__ge__ Method in class mmLib.Structure.Model
__ge__ Method in class mmLib.Structure.Segment
__getattr__ Method in class mmLib.mmCIF.mmCIFData
__getattr__ Method in class mmLib.mmCIF.mmCIFFile
__getattr__ Method in class mmLib.mmCIF.mmCIFRow
__getattr__ Method in class mmLib.mmCIF.mmCIFTable
__getattribute__ Method in class __builtin__.dict
__getattribute__ Method in class __builtin__.list
__getattribute__ Method in class __builtin__.object
__getattribute__ Method in class __builtin__.type
__getitem__ Method in class __builtin__.dict
__getitem__ Method in class __builtin__.list
__getitem__ Method in class exceptions.Exception
__getitem__ Method in class mmLib.Sequence.Sequence
__getitem__ Method in class mmLib.Structure.Atom
__getitem__ Method in class mmLib.Structure.Fragment
__getitem__ Method in class mmLib.Structure.Model
__getitem__ Method in class mmLib.Structure.Segment
__getitem__ Method in class mmLib.Structure.Structure
__getitem__ Method in class mmLib.mmCIF.mmCIFData
__getitem__ Method in class mmLib.mmCIF.mmCIFFile
__getitem__ Method in class mmLib.mmCIF.mmCIFRow
__getitem__ Method in class mmLib.mmCIF.mmCIFTable
__getslice__ Method in class __builtin__.list
__gt__ Method in class __builtin__.dict
__gt__ Method in class __builtin__.list
__gt__ Method in class mmLib.Structure.Atom
__gt__ Method in class mmLib.Structure.Fragment
__gt__ Method in class mmLib.Structure.FragmentID
__gt__ Method in class mmLib.Structure.Model
__gt__ Method in class mmLib.Structure.Segment
__hash__ Method in class __builtin__.dict
__hash__ Method in class __builtin__.list
__hash__ Method in class __builtin__.object
__hash__ Method in class __builtin__.type
__iadd__ Method in class __builtin__.list
__imul__ Method in class __builtin__.list
__init__ Method in class __builtin__.dict
__init__ Method in class __builtin__.list
__init__ Method in class __builtin__.object
__init__ Method in class exceptions.Exception
__init__ Method in class mmLib.ConsoleOutput.ConesoleOutput
__init__ Method in class mmLib.FileIO.ZCat
__init__ Method in class mmLib.GeometryDict.XYZDict
__init__ Method in class mmLib.Library.ElementDesc
__init__ Method in class mmLib.Library.MonomerDesc
__init__ Method in class mmLib.OpenGLDriver.OpenGLDriver
__init__ Method in class mmLib.PDB.PDBValueError
__init__ Method in class mmLib.PDBBuilder.PDBFileBuilder
__init__ Method in class mmLib.R3DDriver.Raster3DDriver
__init__ Method in class mmLib.R3DDriver.TeeWrite
__init__ Method in class mmLib.Sequence.Sequence
__init__ Method in class mmLib.Structure.AlphaHelix
__init__ Method in class mmLib.Structure.Atom
__init__ Method in class mmLib.Structure.AtomOverwrite
__init__ Method in class mmLib.Structure.BetaSheet
__init__ Method in class mmLib.Structure.Bond
__init__ Method in class mmLib.Structure.Chain
__init__ Method in class mmLib.Structure.Fragment
__init__ Method in class mmLib.Structure.FragmentID
__init__ Method in class mmLib.Structure.Model
__init__ Method in class mmLib.Structure.Segment
__init__ Method in class mmLib.Structure.Site
__init__ Method in class mmLib.Structure.Strand
__init__ Method in class mmLib.Structure.Structure
__init__ Method in class mmLib.StructureBuilder.StructureBuilder
__init__ Method in class mmLib.StructureBuilder.StructureBuilderError
__init__ Method in class mmLib.Superposition.SuperpositionResults
__init__ Method in class mmLib.TLS.GLTLSAtomList
__init__ Method in class mmLib.TLS.GLTLSChain
__init__ Method in class mmLib.TLS.GLTLSGroup
__init__ Method in class mmLib.TLS.TLSFile
__init__ Method in class mmLib.TLS.TLSGroup
__init__ Method in class mmLib.TLS.TLSGroupDesc
__init__ Method in class mmLib.TLS.TLSStructureAnalysis
__init__ Method in class mmLib.UnitCell.UnitCell
__init__ Method in class mmLib.Viewer.GLAtomList
__init__ Method in class mmLib.Viewer.GLAxes
__init__ Method in class mmLib.Viewer.GLChain
__init__ Method in class mmLib.Viewer.GLDrawList
__init__ Method in class mmLib.Viewer.GLObject
__init__ Method in class mmLib.Viewer.GLPropertyDict
__init__ Method in class mmLib.Viewer.GLStructure
__init__ Method in class mmLib.Viewer.GLUnitCell
__init__ Method in class mmLib.Viewer.GLViewer
__init__ Method in class mmLib.mmCIF.mmCIFData
__init__ Method in class mmLib.mmCIF.mmCIFSyntaxError
__init__ Method in class mmLib.mmCIF.mmCIFTable
__init__ Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
__is_sucsessive_record Method in class mmLib.PDB.RecordProcessor
__itemsize__ Variable in class __builtin__.type
__iter__ Method in class __builtin__.dict
__iter__ Method in class __builtin__.list
__iter__ Method in class mmLib.FileIO.ZCat
__iter__ Method in class mmLib.Sequence.Sequence
__iter__ Method in class mmLib.Structure.Altloc
__iter__ Method in class mmLib.Structure.Atom
__iter__ Method in class mmLib.Structure.Fragment
__iter__ Method in class mmLib.Structure.Model
__iter__ Method in class mmLib.Structure.Segment
__iter__ Method in class mmLib.Structure.Structure
__le__ Method in class __builtin__.dict
__le__ Method in class __builtin__.list
__le__ Method in class mmLib.Structure.Atom
__le__ Method in class mmLib.Structure.Fragment
__le__ Method in class mmLib.Structure.FragmentID
__le__ Method in class mmLib.Structure.Model
__le__ Method in class mmLib.Structure.Segment
__len__ Method in class __builtin__.dict
__len__ Method in class __builtin__.list
__len__ Method in class mmLib.Sequence.Sequence
__len__ Method in class mmLib.Structure.Atom
__len__ Method in class mmLib.Structure.Fragment
__len__ Method in class mmLib.Structure.Model
__len__ Method in class mmLib.Structure.Segment
__len__ Method in class mmLib.Structure.Structure
__lt__ Method in class __builtin__.dict
__lt__ Method in class __builtin__.list
__lt__ Method in class mmLib.Structure.Atom
__lt__ Method in class mmLib.Structure.Fragment
__lt__ Method in class mmLib.Structure.FragmentID
__lt__ Method in class mmLib.Structure.Model
__lt__ Method in class mmLib.Structure.Segment
__mro__ Variable in class __builtin__.type
__mul__ Method in class __builtin__.list
__name__ Variable in class __builtin__.type
__ne__ Method in class __builtin__.dict
__ne__ Method in class __builtin__.list
__ne__ Method in class mmLib.Structure.FragmentID
__new__ Method in class __builtin__.dict
__new__ Method in class __builtin__.list
__new__ Method in class __builtin__.object
__new__ Method in class __builtin__.type
__reduce__ Method in class __builtin__.object
__reduce_ex__ Method in class __builtin__.object
__repr__ Method in class __builtin__.dict
__repr__ Method in class __builtin__.list
__repr__ Method in class __builtin__.object
__repr__ Method in class __builtin__.type
__reversed__ Method in class __builtin__.list
__rmul__ Method in class __builtin__.list
__setattr__ Method in class __builtin__.object
__setattr__ Method in class __builtin__.type
__setattr__ Method in class mmLib.PDB.PDBFile
__setitem__ Method in class __builtin__.dict
__setitem__ Method in class __builtin__.list
__setitem__ Method in class mmLib.mmCIF.mmCIFData
__setitem__ Method in class mmLib.mmCIF.mmCIFRow
__setitem__ Method in class mmLib.mmCIF.mmCIFTable
__setslice__ Method in class __builtin__.list
__slots__ Variable in class mmLib.PDB.ANISOU
__slots__ Variable in class mmLib.PDB.ATOM
__slots__ Variable in class mmLib.PDB.AUTHOR
__slots__ Variable in class mmLib.PDB.CAVEAT
__slots__ Variable in class mmLib.PDB.CISPEP
__slots__ Variable in class mmLib.PDB.COMPND
__slots__ Variable in class mmLib.PDB.CONECT
__slots__ Variable in class mmLib.PDB.CRYST1
__slots__ Variable in class mmLib.PDB.CRYST2
__slots__ Variable in class mmLib.PDB.CRYST3
__slots__ Variable in class mmLib.PDB.CRYSTn
__slots__ Variable in class mmLib.PDB.DBREF
__slots__ Variable in class mmLib.PDB.END
__slots__ Variable in class mmLib.PDB.ENDMDL
__slots__ Variable in class mmLib.PDB.EXPDTA
__slots__ Variable in class mmLib.PDB.FORMUL
__slots__ Variable in class mmLib.PDB.HEADER
__slots__ Variable in class mmLib.PDB.HELIX
__slots__ Variable in class mmLib.PDB.HET
__slots__ Variable in class mmLib.PDB.HETATM
__slots__ Variable in class mmLib.PDB.HETNAM
__slots__ Variable in class mmLib.PDB.HETSYN
__slots__ Variable in class mmLib.PDB.HYDBND
__slots__ Variable in class mmLib.PDB.JRNL
__slots__ Variable in class mmLib.PDB.KEYWDS
__slots__ Variable in class mmLib.PDB.LINK
__slots__ Variable in class mmLib.PDB.MASTER
__slots__ Variable in class mmLib.PDB.MODEL
__slots__ Variable in class mmLib.PDB.MODRES
__slots__ Variable in class mmLib.PDB.MTRIX1
__slots__ Variable in class mmLib.PDB.MTRIX2
__slots__ Variable in class mmLib.PDB.MTRIX3
__slots__ Variable in class mmLib.PDB.MTRIXn
__slots__ Variable in class mmLib.PDB.OBSLTE
__slots__ Variable in class mmLib.PDB.ORIGX1
__slots__ Variable in class mmLib.PDB.ORIGX2
__slots__ Variable in class mmLib.PDB.ORIGX3
__slots__ Variable in class mmLib.PDB.ORIGXn
__slots__ Variable in class mmLib.PDB.REMARK
__slots__ Variable in class mmLib.PDB.REVDAT
__slots__ Variable in class mmLib.PDB.SCALE1
__slots__ Variable in class mmLib.PDB.SCALE2
__slots__ Variable in class mmLib.PDB.SCALE3
__slots__ Variable in class mmLib.PDB.SCALEn
__slots__ Variable in class mmLib.PDB.SEQADV
__slots__ Variable in class mmLib.PDB.SEQRES
__slots__ Variable in class mmLib.PDB.SHEET
__slots__ Variable in class mmLib.PDB.SIGUIJ
__slots__ Variable in class mmLib.PDB.SITE
__slots__ Variable in class mmLib.PDB.SLTBRG
__slots__ Variable in class mmLib.PDB.SOURCE
__slots__ Variable in class mmLib.PDB.SPRSDE
__slots__ Variable in class mmLib.PDB.SSBOND
__slots__ Variable in class mmLib.PDB.TER
__slots__ Variable in class mmLib.PDB.TITLE
__slots__ Variable in class mmLib.PDB.TURN
__slots__ Variable in class mmLib.PDB.TVECT
__slots__ Variable in class mmLib.mmCIF.mmCIFData
__slots__ Variable in class mmLib.mmCIF.mmCIFData
__slots__ Variable in class mmLib.mmCIF.mmCIFData
__slots__ Variable in class mmLib.mmCIF.mmCIFRow
__slots__ Variable in class mmLib.mmCIF.mmCIFTable
__str__ Method in class __builtin__.object
__str__ Method in class exceptions.Exception
__str__ Method in class mmLib.PDB.PDBRecord
__str__ Method in class mmLib.PDB.PDBValueError
__str__ Method in class mmLib.Structure.AlphaHelix
__str__ Method in class mmLib.Structure.Atom
__str__ Method in class mmLib.Structure.AtomOverwrite
__str__ Method in class mmLib.Structure.BetaSheet
__str__ Method in class mmLib.Structure.Bond
__str__ Method in class mmLib.Structure.Chain
__str__ Method in class mmLib.Structure.Fragment
__str__ Method in class mmLib.Structure.FragmentID
__str__ Method in class mmLib.Structure.Model
__str__ Method in class mmLib.Structure.Residue
__str__ Method in class mmLib.Structure.Segment
__str__ Method in class mmLib.Structure.Site
__str__ Method in class mmLib.Structure.Strand
__str__ Method in class mmLib.Structure.Structure
__str__ Method in class mmLib.StructureBuilder.StructureBuilderError
__str__ Method in class mmLib.UnitCell.UnitCell
__str__ Method in class mmLib.mmCIF.mmCIFData
__str__ Method in class mmLib.mmCIF.mmCIFFile
__str__ Method in class mmLib.mmCIF.mmCIFSyntaxError
__str__ Method in class mmLib.mmCIFDB.mmCIFDB
__subclasses__ Method in class __builtin__.type
__weakrefoffset__ Variable in class __builtin__.type
_field_list Variable in class mmLib.PDB.ANISOU
_field_list Variable in class mmLib.PDB.ATOM
_field_list Variable in class mmLib.PDB.ATOM
_field_list Variable in class mmLib.PDB.AUTHOR
_field_list Variable in class mmLib.PDB.CAVEAT
_field_list Variable in class mmLib.PDB.CISPEP
_field_list Variable in class mmLib.PDB.COMPND
_field_list Variable in class mmLib.PDB.CONECT
_field_list Variable in class mmLib.PDB.CRYSTn
_field_list Variable in class mmLib.PDB.CRYSTn
_field_list Variable in class mmLib.PDB.CRYSTn
_field_list Variable in class mmLib.PDB.CRYSTn
_field_list Variable in class mmLib.PDB.DBREF
_field_list Variable in class mmLib.PDB.END
_field_list Variable in class mmLib.PDB.ENDMDL
_field_list Variable in class mmLib.PDB.EXPDTA
_field_list Variable in class mmLib.PDB.FORMUL
_field_list Variable in class mmLib.PDB.HEADER
_field_list Variable in class mmLib.PDB.HELIX
_field_list Variable in class mmLib.PDB.HET
_field_list Variable in class mmLib.PDB.HETNAM
_field_list Variable in class mmLib.PDB.HETSYN
_field_list Variable in class mmLib.PDB.HYDBND
_field_list Variable in class mmLib.PDB.JRNL
_field_list Variable in class mmLib.PDB.KEYWDS
_field_list Variable in class mmLib.PDB.LINK
_field_list Variable in class mmLib.PDB.MASTER
_field_list Variable in class mmLib.PDB.MODEL
_field_list Variable in class mmLib.PDB.MODRES
_field_list Variable in class mmLib.PDB.MTRIXn
_field_list Variable in class mmLib.PDB.MTRIXn
_field_list Variable in class mmLib.PDB.MTRIXn
_field_list Variable in class mmLib.PDB.MTRIXn
_field_list Variable in class mmLib.PDB.OBSLTE
_field_list Variable in class mmLib.PDB.ORIGXn
_field_list Variable in class mmLib.PDB.ORIGXn
_field_list Variable in class mmLib.PDB.ORIGXn
_field_list Variable in class mmLib.PDB.ORIGXn
_field_list Variable in class mmLib.PDB.PDBRecord
_field_list Variable in class mmLib.PDB.REMARK
_field_list Variable in class mmLib.PDB.REVDAT
_field_list Variable in class mmLib.PDB.SCALEn
_field_list Variable in class mmLib.PDB.SCALEn
_field_list Variable in class mmLib.PDB.SCALEn
_field_list Variable in class mmLib.PDB.SCALEn
_field_list Variable in class mmLib.PDB.SEQADV
_field_list Variable in class mmLib.PDB.SEQRES
_field_list Variable in class mmLib.PDB.SHEET
_field_list Variable in class mmLib.PDB.SIGATM
_field_list Variable in class mmLib.PDB.SIGUIJ
_field_list Variable in class mmLib.PDB.SITE
_field_list Variable in class mmLib.PDB.SLTBRG
_field_list Variable in class mmLib.PDB.SOURCE
_field_list Variable in class mmLib.PDB.SPRSDE
_field_list Variable in class mmLib.PDB.SSBOND
_field_list Variable in class mmLib.PDB.TER
_field_list Variable in class mmLib.PDB.TITLE
_field_list Variable in class mmLib.PDB.TURN
_field_list Variable in class mmLib.PDB.TVECT
_multi_record Variable in class mmLib.PDB.AUTHOR
_multi_record Variable in class mmLib.PDB.CAVEAT
_multi_record Variable in class mmLib.PDB.COMPND
_multi_record Variable in class mmLib.PDB.EXPDTA
_multi_record Variable in class mmLib.PDB.FORMUL
_multi_record Variable in class mmLib.PDB.HETNAM
_multi_record Variable in class mmLib.PDB.HETSYN
_multi_record Variable in class mmLib.PDB.KEYWDS
_multi_record Variable in class mmLib.PDB.OBSLTE
_multi_record Variable in class mmLib.PDB.REVDAT
_multi_record Variable in class mmLib.PDB.SEQRES
_multi_record Variable in class mmLib.PDB.SOURCE
_multi_record Variable in class mmLib.PDB.SPRSDE
_multi_record Variable in class mmLib.PDB.TITLE
_name Variable in class mmLib.PDB.ANISOU
_name Variable in class mmLib.PDB.ATOM
_name Variable in class mmLib.PDB.AUTHOR
_name Variable in class mmLib.PDB.CAVEAT
_name Variable in class mmLib.PDB.CISPEP
_name Variable in class mmLib.PDB.COMPND
_name Variable in class mmLib.PDB.CONECT
_name Variable in class mmLib.PDB.CRYST1
_name Variable in class mmLib.PDB.CRYST2
_name Variable in class mmLib.PDB.CRYST3
_name Variable in class mmLib.PDB.DBREF
_name Variable in class mmLib.PDB.END
_name Variable in class mmLib.PDB.ENDMDL
_name Variable in class mmLib.PDB.EXPDTA
_name Variable in class mmLib.PDB.FORMUL
_name Variable in class mmLib.PDB.HEADER
_name Variable in class mmLib.PDB.HELIX
_name Variable in class mmLib.PDB.HET
_name Variable in class mmLib.PDB.HETATM
_name Variable in class mmLib.PDB.HETNAM
_name Variable in class mmLib.PDB.HETSYN
_name Variable in class mmLib.PDB.HYDBND
_name Variable in class mmLib.PDB.JRNL
_name Variable in class mmLib.PDB.KEYWDS
_name Variable in class mmLib.PDB.LINK
_name Variable in class mmLib.PDB.MASTER
_name Variable in class mmLib.PDB.MODEL
_name Variable in class mmLib.PDB.MODRES
_name Variable in class mmLib.PDB.MTRIX1
_name Variable in class mmLib.PDB.MTRIX2
_name Variable in class mmLib.PDB.MTRIX3
_name Variable in class mmLib.PDB.OBSLTE
_name Variable in class mmLib.PDB.ORIGX1
_name Variable in class mmLib.PDB.ORIGX2
_name Variable in class mmLib.PDB.ORIGX3
_name Variable in class mmLib.PDB.PDBRecord
_name Variable in class mmLib.PDB.PDBRecord
_name Variable in class mmLib.PDB.PDBRecord
_name Variable in class mmLib.PDB.PDBRecord
_name Variable in class mmLib.PDB.PDBRecord
_name Variable in class mmLib.PDB.REMARK
_name Variable in class mmLib.PDB.REVDAT
_name Variable in class mmLib.PDB.SCALE1
_name Variable in class mmLib.PDB.SCALE2
_name Variable in class mmLib.PDB.SCALE3
_name Variable in class mmLib.PDB.SEQADV
_name Variable in class mmLib.PDB.SEQRES
_name Variable in class mmLib.PDB.SHEET
_name Variable in class mmLib.PDB.SIGATM
_name Variable in class mmLib.PDB.SIGUIJ
_name Variable in class mmLib.PDB.SITE
_name Variable in class mmLib.PDB.SLTBRG
_name Variable in class mmLib.PDB.SOURCE
_name Variable in class mmLib.PDB.SPRSDE
_name Variable in class mmLib.PDB.SSBOND
_name Variable in class mmLib.PDB.TER
_name Variable in class mmLib.PDB.TITLE
_name Variable in class mmLib.PDB.TURN
_name Variable in class mmLib.PDB.TVECT
_technique_list Variable in class mmLib.PDB.EXPDTA
_typeMap Variable in module mmLib.NumericCompat
add Method in class mmLib.GeometryDict.XYZDict
add__atom_site Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
add__cell Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
add__entity Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
add__entity_poly Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
add__entry Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
add__symmetry Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
add_alpha_helix Method in class mmLib.Structure.Model
add_alpha_helix Method in class mmLib.Structure.Structure
add_ATOM Method in class mmLib.PDBBuilder.PDBFileBuilder
add_atom Method in class mmLib.Structure.Altloc
add_atom Method in class mmLib.Structure.Fragment
add_atom Method in class mmLib.Structure.Model
add_atom Method in class mmLib.Structure.Segment
add_atom Method in class mmLib.Structure.Structure
add_atom_records Method in class mmLib.PDBBuilder.PDBFileBuilder
add_beta_sheet Method in class mmLib.Structure.Model
add_beta_sheet Method in class mmLib.Structure.Structure
add_bonds_from_covalent_distance Method in class mmLib.Structure.Structure
add_bonds_from_library Method in class mmLib.Structure.Structure
add_chain Method in class mmLib.Structure.Model
add_chain Method in class mmLib.Structure.Structure
add_connectivity_annotation_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_connectivity_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_coordinate_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_crystallographic_coordinate_transformation_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_fragment Method in class mmLib.Structure.Chain
add_fragment Method in class mmLib.Structure.Model
add_fragment Method in class mmLib.Structure.Segment
add_fragment Method in class mmLib.Structure.Site
add_fragment Method in class mmLib.Structure.Structure
add_gl_tls_group Method in class mmLib.TLS.GLTLSChain
add_heterogen_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_miscellaneous_fatures_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_model Method in class mmLib.Structure.Structure
add_primary_structure_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_range Method in class mmLib.TLS.TLSGroupDesc
add_secondary_structure_section Method in class mmLib.PDBBuilder.PDBFileBuilder
add_segment Method in class mmLib.Structure.AlphaHelix
add_segment Method in class mmLib.Structure.Strand
add_site Method in class mmLib.Structure.Model
add_site Method in class mmLib.Structure.Structure
add_strand Method in class mmLib.Structure.BetaSheet
add_table Method in class mmLib.mmCIFDB.mmCIFDB
add_tables Method in class mmLib.mmCIFDB.mmCIFDB
add_title_section Method in class mmLib.PDBBuilder.PDBFileBuilder
addquaternion Function in module mmLib.AtomMath
AlphaHelix Class in module mmLib.Structure
alt_loc_list Method in class mmLib.Structure.Structure
ALT_RES_NAME_DICT Variable in module mmLib.Library
Altloc Class in module mmLib.Structure
AMINO_ACID13_DICT Variable in module mmLib.Library
AMINO_ACID31_DICT Variable in module mmLib.Library
AMINO_ACID3_LIST Variable in module mmLib.Library
AminoAcidResidue Class in module mmLib.Structure
ANISOU Class in module mmLib.PDB
append Method in class __builtin__.list
append Method in class mmLib.PDB.PDBFile
append Method in class mmLib.mmCIF.mmCIFData
append Method in class mmLib.mmCIF.mmCIFFile
append Method in class mmLib.mmCIF.mmCIFTable
append_column Method in class mmLib.mmCIF.mmCIFTable
array Function in module mmLib.NumericCompat
ATOM Class in module mmLib.PDB
Atom Class in module mmLib.Structure
atom_filter Method in class mmLib.TLS.TLSStructureAnalysis
ATOM_get_name Function in module mmLib.PDB
AtomList Class in module mmLib.Structure
AtomMath Module in package mmLib
AtomOverwrite Class in module mmLib.Structure
AUTHOR Class in module mmLib.PDB
autoset_columns Method in class mmLib.mmCIF.mmCIFTable
B2U Variable in module mmLib.Constants
BASE_LINE_WIDTH Variable in module mmLib.R3DDriver
BetaSheet Class in module mmLib.Structure
Bond Class in module mmLib.Structure
bond_processor Method in class mmLib.PDBBuilder.PDBStructureBuilder
bookkeeping_section Method in class mmLib.PDBBuilder.PDBFileBuilder
CA_PIVOT_ATOMS Variable in module mmLib.TLS
calc_adv_anisotropy Method in class mmLib.Structure.AtomList
calc_adv_anisotropy3 Method in class mmLib.Structure.AtomList
calc_adv_temp_factor Method in class mmLib.Structure.AtomList
calc_adv_U Method in class mmLib.Structure.AtomList
calc_alpha_deg Method in class mmLib.UnitCell.UnitCell
calc_angle Function in module mmLib.AtomMath
calc_anisotropy Function in module mmLib.AtomMath
calc_anisotropy Method in class mmLib.Structure.Atom
calc_anisotropy3 Method in class mmLib.Structure.Atom
calc_atom_centroid Function in module mmLib.AtomMath
calc_atom_mean_temp_factor Function in module mmLib.AtomMath
calc_beta_deg Method in class mmLib.UnitCell.UnitCell
calc_CCuij Function in module mmLib.AtomMath
calc_cell Method in class mmLib.UnitCell.UnitCell
calc_centroid Method in class mmLib.Structure.AtomList
calc_COR Method in class mmLib.TLS.TLSGroup
calc_distance Function in module mmLib.AtomMath
calc_DP2uij Function in module mmLib.AtomMath
calc_frac_to_orth Method in class mmLib.UnitCell.UnitCell
calc_fractionalization_matrix Method in class mmLib.UnitCell.UnitCell
calc_gamma_deg Method in class mmLib.UnitCell.UnitCell
calc_geom_key Method in class mmLib.GeometryDict.XYZDict
calc_inertia_tensor Function in module mmLib.AtomMath
calc_itls_center_of_reaction Function in module mmLib.TLS
calc_itls_uiso Function in module mmLib.TLS
calc_length Method in class mmLib.Structure.Bond
calc_LS_displacement Function in module mmLib.TLS
calc_mainchain_bond_angle Method in class mmLib.Structure.AminoAcidResidue
calc_mainchain_bond_length Method in class mmLib.Structure.AminoAcidResidue
calc_next_alt_loc_id Method in class mmLib.Structure.Altloc
calc_orth_symop Method in class mmLib.UnitCell.UnitCell
calc_orth_symop2 Method in class mmLib.UnitCell.UnitCell
calc_orth_to_frac Method in class mmLib.UnitCell.UnitCell
calc_orthogonalization_matrix Method in class mmLib.UnitCell.UnitCell
calc_pucker_torsion Method in class mmLib.Structure.AminoAcidResidue
calc_reciprocal_unit_cell Method in class mmLib.UnitCell.UnitCell
calc_rmsd Function in module mmLib.TLS
calc_s11_s22_s33 Method in class mmLib.TLS.TLSGroup
calc_s11_s22_s33 Function in module mmLib.TLS
calc_Suij Function in module mmLib.AtomMath
calc_TLS_center_of_reaction Function in module mmLib.TLS
calc_tls_info Method in class mmLib.TLS.TLSGroup
calc_TLS_least_squares_fit Method in class mmLib.TLS.TLSGroup
calc_TLS_least_squares_fit Function in module mmLib.TLS
calc_tls_name Method in class mmLib.TLS.TLSGroupDesc
calc_TLS_plus_b_least_squares_fit Function in module mmLib.TLS
calc_TLSCA_least_squares_fit Function in module mmLib.TLS
calc_torsion Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_angle Function in module mmLib.AtomMath
calc_torsion_chi Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_chi1 Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_chi2 Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_chi3 Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_chi4 Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_omega Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_phi Method in class mmLib.Structure.AminoAcidResidue
calc_torsion_psi Method in class mmLib.Structure.AminoAcidResidue
calc_Uiso Method in class mmLib.Structure.Atom
calc_Utls Function in module mmLib.TLS
calc_v Method in class mmLib.UnitCell.UnitCell
calc_volume Method in class mmLib.UnitCell.UnitCell
CAVEAT Class in module mmLib.PDB
cell_search_iter Method in class mmLib.UnitCell.UnitCell
Chain Class in module mmLib.Structure
ChainOverwrite Class in module mmLib.Structure
CIF_BUILD_TABLES Variable in module mmLib.mmCIFBuilder
CISPEP Class in module mmLib.PDB
clear Method in class __builtin__.dict
close Method in class mmLib.R3DDriver.TeeWrite
color_by_gof Method in class mmLib.TLS.GLTLSChain
color_by_group Method in class mmLib.TLS.GLTLSChain
COLOR_NAMES Variable in module mmLib.Colors
COLOR_NAMES_CAPITALIZED Variable in module mmLib.Colors
COLOR_RGBF Variable in module mmLib.Colors
COLOR_RGBI Variable in module mmLib.Colors
Colors Module in package mmLib
COLORS Variable in module mmLib.Colors
columns Variable in class mmLib.mmCIF.mmCIFTable
columns_lower Variable in class mmLib.mmCIF.mmCIFTable
complete_L Method in class mmLib.TLS.TLSFileFormatPDB
complete_S Method in class mmLib.TLS.TLSFileFormatPDB
complete_T Method in class mmLib.TLS.TLSFileFormatPDB
COMPND Class in module mmLib.PDB
CONECT Class in module mmLib.PDB
ConesoleOutput Class in module mmLib.ConsoleOutput
confirm_table Method in class mmLib.mmCIFDB.mmCIFDB
console_output_object Variable in module mmLib.ConsoleOutput
ConsoleOutput Module in package mmLib
Constants Module in package mmLib
construct_fragments Method in class mmLib.Structure.Site
construct_segment Method in class mmLib.Structure.AlphaHelix
construct_segment Method in class mmLib.Structure.Chain
construct_segment Method in class mmLib.Structure.Segment
construct_segment Method in class mmLib.Structure.Strand
construct_segments Method in class mmLib.Structure.BetaSheet
construct_sequence_list Method in class mmLib.Structure.Chain
construct_sub_segment Method in class mmLib.Structure.Segment
construct_tls_group Method in class mmLib.TLS.TLSGroupDesc
construct_tls_group_with_atoms Method in class mmLib.TLS.TLSGroupDesc
construct_tls_groups Method in class mmLib.TLS.TLSFile
construct_tls_groups_with_atoms Method in class mmLib.TLS.TLSFile
convert_frag_id_load Method in class mmLib.TLS.TLSFileFormatTLSOUT
convert_frag_id_save Method in class mmLib.TLS.TLSFileFormatTLSOUT
copy Method in class __builtin__.dict
count Method in class __builtin__.list
count_all_atoms Method in class mmLib.Structure.Fragment
count_all_atoms Method in class mmLib.Structure.Model
count_all_atoms Method in class mmLib.Structure.Segment
count_all_atoms Method in class mmLib.Structure.Structure
count_amino_acids Method in class mmLib.Structure.Model
count_amino_acids Method in class mmLib.Structure.Segment
count_amino_acids Method in class mmLib.Structure.Structure
count_atoms Method in class mmLib.Structure.Fragment
count_atoms Method in class mmLib.Structure.Model
count_atoms Method in class mmLib.Structure.Segment
count_atoms Method in class mmLib.Structure.Structure
count_bonds Method in class mmLib.Structure.Model
count_bonds Method in class mmLib.Structure.Structure
count_chains Method in class mmLib.Structure.Model
count_chains Method in class mmLib.Structure.Structure
count_fragments Method in class mmLib.Structure.Model
count_fragments Method in class mmLib.Structure.Segment
count_fragments Method in class mmLib.Structure.Structure
count_models Method in class mmLib.Structure.Structure
count_non_standard_residues Method in class mmLib.Structure.Model
count_non_standard_residues Method in class mmLib.Structure.Segment
count_non_standard_residues Method in class mmLib.Structure.Structure
count_nucleic_acids Method in class mmLib.Structure.Model
count_nucleic_acids Method in class mmLib.Structure.Segment
count_nucleic_acids Method in class mmLib.Structure.Structure
count_standard_residues Method in class mmLib.Structure.Model
count_standard_residues Method in class mmLib.Structure.Segment
count_standard_residues Method in class mmLib.Structure.Structure
count_waters Method in class mmLib.Structure.Model
count_waters Method in class mmLib.Structure.Segment
count_waters Method in class mmLib.Structure.Structure
create_bond Method in class mmLib.Structure.Atom
create_bonds Method in class mmLib.Structure.Atom
create_bonds Method in class mmLib.Structure.Fragment
create_bonds Method in class mmLib.Structure.Residue
cross Function in module mmLib.AtomMath
CRYST1 Class in module mmLib.PDB
CRYST2 Class in module mmLib.PDB
CRYST3 Class in module mmLib.PDB
CRYSTn Class in module mmLib.PDB
data Variable in class mmLib.mmCIF.mmCIFTable
data_type Method in class mmLib.mmCIF.mmCIFFileWriter
DBREF Class in module mmLib.PDB
debug Method in class mmLib.ConsoleOutput.ConesoleOutput
debug Function in module mmLib.ConsoleOutput
DEG2RAD Variable in module mmLib.Constants
DEG2RAD2 Variable in module mmLib.Constants
dict Class in module __builtin__
disable Function in module mmLib.ConsoleOutput
dmatrix Function in module mmLib.AtomMath
dmatrixu Function in module mmLib.AtomMath
draw_axes Method in class mmLib.Viewer.GLAxes
draw_cell Method in class mmLib.Viewer.GLUnitCell
draw_fan Method in class mmLib.TLS.GLTLSAtomList
draw_L1_surface Method in class mmLib.TLS.GLTLSGroup
draw_L2_surface Method in class mmLib.TLS.GLTLSGroup
draw_L3_surface Method in class mmLib.TLS.GLTLSGroup
draw_tensors Method in class mmLib.TLS.GLTLSGroup
draw_tls_surface Method in class mmLib.TLS.GLTLSGroup
draw_unit_cell Method in class mmLib.Viewer.GLUnitCell
draw_Utls_axes Method in class mmLib.TLS.GLTLSGroup
draw_Utls_ellipse Method in class mmLib.TLS.GLTLSGroup
draw_Utls_rms Method in class mmLib.TLS.GLTLSGroup
ELEMENT_CACHE Variable in module mmLib.Library
ELEMENT_CIF_FILE Variable in module mmLib.Library
ELEMENT_DATA_PATH Variable in module mmLib.Library
ELEMENT_SYMBOL_DICT Variable in module mmLib.Library
ElementDesc Class in module mmLib.Library
enable Function in module mmLib.ConsoleOutput
END Class in module mmLib.PDB
ENDMDL Class in module mmLib.PDB
Exception Class in module exceptions
EXPDTA Class in module mmLib.PDB
extend Method in class __builtin__.list
fatal Method in class mmLib.ConsoleOutput.ConesoleOutput
fatal Function in module mmLib.ConsoleOutput
file Variable in class mmLib.mmCIF.mmCIFData
file Variable in class mmLib.mmCIF.mmCIFData
file Variable in class mmLib.mmCIF.mmCIFData
FileIO Module in package mmLib
FileIOUnsupportedFormat Class in module mmLib.FileIO
FinishMe Class in module mmLib.R3DDriver
fit_TLS_segments Method in class mmLib.TLS.TLSStructureAnalysis
form_mstring Method in class mmLib.mmCIF.mmCIFFileWriter
FORMUL Class in module mmLib.PDB
Fragment Class in module mmLib.Structure
fragment_id_cmp Function in module mmLib.Structure
fragment_id_eq Function in module mmLib.Structure
fragment_id_ge Function in module mmLib.Structure
fragment_id_gt Function in module mmLib.Structure
fragment_id_le Function in module mmLib.Structure
fragment_id_lt Function in module mmLib.Structure
fragment_id_split Function in module mmLib.Structure
FragmentID Class in module mmLib.Structure
FragmentOverwrite Class in module mmLib.Structure
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
fromkeys Method in class __builtin__.type
GAUSS3C Variable in module mmLib.Gaussian
Gaussian Module in package mmLib
gen_token_iter Method in class mmLib.mmCIF.mmCIFFileParser
GeometryDict Module in package mmLib
get Method in class __builtin__.dict
get Method in class mmLib.mmCIF.mmCIFData
get Method in class mmLib.mmCIF.mmCIFFile
get Method in class mmLib.mmCIF.mmCIFRow
get Method in class mmLib.mmCIF.mmCIFTable
get_alt_loc Method in class mmLib.Structure.Atom
get_atom Method in class mmLib.Structure.Fragment
get_atom1 Method in class mmLib.Structure.Bond
get_atom2 Method in class mmLib.Structure.Bond
get_beta_sheet Method in class mmLib.Structure.Strand
get_bond Method in class mmLib.Structure.Atom
get_bonded_atom Method in class mmLib.Structure.Atom
get_chain Method in class mmLib.Structure.AlphaHelix
get_chain Method in class mmLib.Structure.Atom
get_chain Method in class mmLib.Structure.Fragment
get_chain Method in class mmLib.Structure.Model
get_chain Method in class mmLib.Structure.Segment
get_chain Method in class mmLib.Structure.Strand
get_chain Method in class mmLib.Structure.Structure
get_chain1 Method in class mmLib.Structure.Bond
get_chain2 Method in class mmLib.Structure.Bond
get_data Method in class mmLib.mmCIF.mmCIFFile
get_default_alt_loc Method in class mmLib.Structure.Structure
get_default_model Method in class mmLib.Structure.Structure
get_deposition_date Method in class mmLib.mmCIFDB.mmCIFDB
get_entity_desc_from_id Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
get_entity_desc_from_sequence Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
get_entry_id Method in class mmLib.mmCIFDB.mmCIFDB
get_equivalent_atom Method in class mmLib.Structure.Fragment
get_equivalent_atom Method in class mmLib.Structure.Model
get_equivalent_atom Method in class mmLib.Structure.Segment
get_equivalent_atom Method in class mmLib.Structure.Structure
get_file_arg Function in module mmLib.FileIO
get_file_extension Function in module mmLib.FileIO
get_fragment Method in class mmLib.Structure.Atom
get_fragment Method in class mmLib.Structure.Segment
get_fragment1 Method in class mmLib.Structure.Bond
get_fragment2 Method in class mmLib.Structure.Bond
get_fragment_id Method in class mmLib.PDBBuilder.PDBStructureBuilder
get_fragment_sequence_index Method in class mmLib.Structure.Chain
get_lower Method in class mmLib.mmCIF.mmCIFRow
get_model Method in class mmLib.Structure.AlphaHelix
get_model Method in class mmLib.Structure.Atom
get_model Method in class mmLib.Structure.BetaSheet
get_model Method in class mmLib.Structure.Fragment
get_model Method in class mmLib.Structure.Segment
get_model Method in class mmLib.Structure.Site
get_model Method in class mmLib.Structure.Strand
get_model Method in class mmLib.Structure.Structure
get_model1 Method in class mmLib.Structure.Bond
get_model2 Method in class mmLib.Structure.Bond
get_offset_fragment Method in class mmLib.Structure.Fragment
get_offset_residue Method in class mmLib.Structure.Residue
get_partner Method in class mmLib.Structure.Bond
get_row Method in class mmLib.mmCIF.mmCIFTable
get_row1 Method in class mmLib.mmCIF.mmCIFTable
get_segment Method in class mmLib.Structure.AlphaHelix
get_segment Method in class mmLib.Structure.Strand
get_single Method in class mmLib.mmCIFDB.mmCIFDB
get_struct_keywords Method in class mmLib.mmCIFDB.mmCIFDB
get_structure Method in class mmLib.Structure.AlphaHelix
get_structure Method in class mmLib.Structure.Atom
get_structure Method in class mmLib.Structure.BetaSheet
get_structure Method in class mmLib.Structure.Fragment
get_structure Method in class mmLib.Structure.Model
get_structure Method in class mmLib.Structure.Segment
get_structure Method in class mmLib.Structure.Site
get_structure Method in class mmLib.Structure.Strand
get_structure Method in class mmLib.Structure.Structure
get_structure1 Method in class mmLib.Structure.Bond
get_structure2 Method in class mmLib.Structure.Bond
get_table Method in class mmLib.mmCIF.mmCIFData
get_table Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
get_tag Method in class mmLib.mmCIF.mmCIFData
get_U Method in class mmLib.Structure.Atom
getitem_lower Method in class mmLib.mmCIF.mmCIFRow
GetSpaceGroup Function in module mmLib.SpaceGroups
glaccel_glr_axis Method in class mmLib.OpenGLDriver.OpenGLDriver
glaccel_glr_sphere Method in class mmLib.OpenGLDriver.OpenGLDriver
glaccel_glr_tube Method in class mmLib.OpenGLDriver.OpenGLDriver
glaccel_glr_Uellipse Method in class mmLib.OpenGLDriver.OpenGLDriver
glaccel_glr_Urms Method in class mmLib.OpenGLDriver.OpenGLDriver
glal_calc_color Method in class mmLib.TLS.GLTLSAtomList
glal_calc_color Method in class mmLib.Viewer.GLAtomList
glal_calc_color_label Method in class mmLib.Viewer.GLAtomList
glal_calc_color_range Method in class mmLib.Viewer.GLAtomList
glal_calc_color_trace Method in class mmLib.TLS.GLTLSAtomList
glal_calc_color_trace Method in class mmLib.Viewer.GLAtomList
glal_calc_color_U Method in class mmLib.TLS.GLTLSAtomList
glal_calc_color_Uaxes Method in class mmLib.Viewer.GLAtomList
glal_calc_color_Uellipse Method in class mmLib.TLS.GLTLSAtomList
glal_calc_color_Uellipse Method in class mmLib.Viewer.GLAtomList
glal_calc_color_Urms Method in class mmLib.TLS.GLTLSAtomList
glal_calc_color_Urms Method in class mmLib.Viewer.GLAtomList
glal_calc_position Method in class mmLib.Viewer.GLAtomList
glal_calc_U Method in class mmLib.TLS.GLTLSAtomList
glal_calc_U Method in class mmLib.Viewer.GLAtomList
glal_draw_ball_stick Method in class mmLib.Viewer.GLAtomList
glal_draw_cpk Method in class mmLib.Viewer.GLAtomList
glal_draw_cross Method in class mmLib.Viewer.GLAtomList
glal_draw_labels Method in class mmLib.Viewer.GLAtomList
glal_draw_lines Method in class mmLib.Viewer.GLAtomList
glal_draw_trace Method in class mmLib.Viewer.GLAtomList
glal_draw_Uaxes Method in class mmLib.Viewer.GLAtomList
glal_draw_Uellipse Method in class mmLib.Viewer.GLAtomList
glal_draw_Urms Method in class mmLib.Viewer.GLAtomList
glal_iter_atoms Method in class mmLib.TLS.GLTLSAtomList
glal_iter_atoms Method in class mmLib.Viewer.GLAtomList
glal_iter_atoms Method in class mmLib.Viewer.GLChain
glal_iter_atoms_filtered Method in class mmLib.Viewer.GLAtomList
glal_iter_chains Method in class mmLib.Viewer.GLAtomList
glal_iter_chains Method in class mmLib.Viewer.GLChain
glal_iter_fragments Method in class mmLib.Viewer.GLAtomList
glal_iter_fragments Method in class mmLib.Viewer.GLChain
glal_iter_models Method in class mmLib.Viewer.GLAtomList
glal_iter_visible_atoms Method in class mmLib.Viewer.GLAtomList
glal_rebuild_atom_dicts Method in class mmLib.Viewer.GLAtomList
glal_res_type_color_dict Variable in class mmLib.Viewer.GLAtomList
glal_res_type_color_dict Variable in class mmLib.Viewer.GLAtomList
glal_res_type_color_dict Variable in class mmLib.Viewer.GLAtomList
glal_update_color_value Method in class mmLib.Viewer.GLAtomList
glal_update_properties Method in class mmLib.Viewer.GLAtomList
GLAtomList Class in module mmLib.Viewer
GLAxes Class in module mmLib.Viewer
GLChain Class in module mmLib.Viewer
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_color_list Variable in class mmLib.Viewer.GLDrawList
gldl_draw Method in class mmLib.Viewer.GLDrawList
gldl_draw_method_compile Method in class mmLib.Viewer.GLDrawList
gldl_draw_method_delete_compiled Method in class mmLib.Viewer.GLDrawList
gldl_draw_method_delete_compiled_all_drivers Method in class mmLib.Viewer.GLDrawList
gldl_draw_method_get Method in class mmLib.Viewer.GLDrawList
gldl_draw_method_install Method in class mmLib.Viewer.GLDrawList
gldl_draw_transparent Method in class mmLib.Viewer.GLDrawList
gldl_get_glviewer Method in class mmLib.Viewer.GLDrawList
gldl_install_draw_methods Method in class mmLib.TLS.GLTLSAtomList
gldl_install_draw_methods Method in class mmLib.TLS.GLTLSGroup
gldl_install_draw_methods Method in class mmLib.Viewer.GLAtomList
gldl_install_draw_methods Method in class mmLib.Viewer.GLAxes
gldl_install_draw_methods Method in class mmLib.Viewer.GLDrawList
gldl_install_draw_methods Method in class mmLib.Viewer.GLUnitCell
gldl_iter_multidraw_all Method in class mmLib.Viewer.GLDrawList
gldl_iter_multidraw_animate Method in class mmLib.TLS.GLTLSAtomList
gldl_iter_multidraw_self Method in class mmLib.TLS.GLTLSAtomList
gldl_iter_multidraw_self Method in class mmLib.TLS.GLTLSGroup
gldl_iter_multidraw_self Method in class mmLib.Viewer.GLAtomList
gldl_iter_multidraw_self Method in class mmLib.Viewer.GLDrawList
gldl_pop_matrix Method in class mmLib.Viewer.GLDrawList
gldl_property_color_rgbf Method in class mmLib.Viewer.GLDrawList
gldl_push_matrix Method in class mmLib.Viewer.GLDrawList
gldl_redraw Method in class mmLib.Viewer.GLDrawList
gldl_render Method in class mmLib.Viewer.GLDrawList
gldl_render_draw_methods Method in class mmLib.Viewer.GLDrawList
gldl_update_cb Method in class mmLib.Viewer.GLDrawList
GLDrawList Class in module mmLib.Viewer
glo_add_child Method in class mmLib.Viewer.GLObject
glo_add_property Method in class mmLib.Viewer.GLObject
glo_add_update_callback Method in class mmLib.Viewer.GLObject
glo_append_child Method in class mmLib.Viewer.GLObject
glo_count_descendants Method in class mmLib.Viewer.GLObject
glo_get_child Method in class mmLib.Viewer.GLObject
glo_get_child_path Method in class mmLib.Viewer.GLObject
glo_get_degree Method in class mmLib.Viewer.GLObject
glo_get_depth Method in class mmLib.Viewer.GLObject
glo_get_glstructure Method in class mmLib.Viewer.GLObject
glo_get_index_path Method in class mmLib.Viewer.GLObject
glo_get_lowest_common_ancestor Method in class mmLib.Viewer.GLObject
glo_get_parent Method in class mmLib.Viewer.GLObject
glo_get_parent_list Method in class mmLib.Viewer.GLObject
glo_get_path Method in class mmLib.Viewer.GLObject
glo_get_properties_id Method in class mmLib.Viewer.GLObject
glo_get_property_desc Method in class mmLib.Viewer.GLObject
glo_get_root Method in class mmLib.Viewer.GLObject
glo_init_properties Method in class mmLib.Viewer.GLObject
glo_install_properties Method in class mmLib.TLS.GLTLSAtomList
glo_install_properties Method in class mmLib.TLS.GLTLSChain
glo_install_properties Method in class mmLib.TLS.GLTLSGroup
glo_install_properties Method in class mmLib.Viewer.GLAtomList
glo_install_properties Method in class mmLib.Viewer.GLAxes
glo_install_properties Method in class mmLib.Viewer.GLChain
glo_install_properties Method in class mmLib.Viewer.GLDrawList
glo_install_properties Method in class mmLib.Viewer.GLObject
glo_install_properties Method in class mmLib.Viewer.GLStructure
glo_install_properties Method in class mmLib.Viewer.GLUnitCell
glo_install_properties Method in class mmLib.Viewer.GLViewer
glo_is_descendant_of Method in class mmLib.Viewer.GLObject
glo_iter_children Method in class mmLib.Viewer.GLObject
glo_iter_preorder_traversal Method in class mmLib.Viewer.GLObject
glo_iter_property_desc Method in class mmLib.Viewer.GLObject
glo_link_child_property Method in class mmLib.Viewer.GLObject
glo_name Method in class mmLib.Viewer.GLChain
glo_name Method in class mmLib.Viewer.GLObject
glo_name Method in class mmLib.Viewer.GLStructure
glo_prepend_child Method in class mmLib.Viewer.GLObject
glo_remove Method in class mmLib.Viewer.GLDrawList
glo_remove Method in class mmLib.Viewer.GLObject
glo_remove_child Method in class mmLib.Viewer.GLDrawList
glo_remove_child Method in class mmLib.Viewer.GLObject
glo_remove_update_callback Method in class mmLib.Viewer.GLObject
glo_set_name Method in class mmLib.Viewer.GLObject
glo_set_properties_id Method in class mmLib.Viewer.GLObject
glo_update_properties Method in class mmLib.Viewer.GLObject
glo_update_properties_path Method in class mmLib.Viewer.GLObject
GLObject Class in module mmLib.Viewer
GLPropertyDefault Class in module mmLib.Viewer
GLPropertyDict Class in module mmLib.Viewer
glr_axis Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_axis Method in class mmLib.R3DDriver.Raster3DDriver
glr_begin_lines Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_begin_lines Method in class mmLib.R3DDriver.Raster3DDriver
glr_begin_quads Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_begin_quads Method in class mmLib.R3DDriver.Raster3DDriver
glr_begin_triangle_fan Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_begin_triangle_fan Method in class mmLib.R3DDriver.Raster3DDriver
glr_begin_triangles Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_begin_triangles Method in class mmLib.R3DDriver.Raster3DDriver
glr_compile_current Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_compile_delete Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_compile_end Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_compile_exists Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_compile_render Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_compile_start Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_compile_supported Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_compile_supported Method in class mmLib.R3DDriver.Raster3DDriver
glr_construct_header Method in class mmLib.R3DDriver.Raster3DDriver
glr_cross Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_cross Method in class mmLib.R3DDriver.Raster3DDriver
glr_end Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_end_quads Method in class mmLib.R3DDriver.Raster3DDriver
glr_end_triangle_fan Method in class mmLib.R3DDriver.Raster3DDriver
glr_init_state Method in class mmLib.R3DDriver.Raster3DDriver
glr_light_two_sides_disable Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_light_two_sides_disable Method in class mmLib.R3DDriver.Raster3DDriver
glr_light_two_sides_enable Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_light_two_sides_enable Method in class mmLib.R3DDriver.Raster3DDriver
glr_lighting_disable Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_lighting_disable Method in class mmLib.R3DDriver.Raster3DDriver
glr_lighting_enable Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_lighting_enable Method in class mmLib.R3DDriver.Raster3DDriver
glr_line Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_line Method in class mmLib.R3DDriver.Raster3DDriver
glr_mult_matrix_R Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_mult_matrix_R Method in class mmLib.R3DDriver.Raster3DDriver
glr_mult_matrix_Rt Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_mult_matrix_Rt Method in class mmLib.R3DDriver.Raster3DDriver
glr_normal Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_normal Method in class mmLib.R3DDriver.Raster3DDriver
glr_normal3 Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_normal3 Method in class mmLib.R3DDriver.Raster3DDriver
glr_normalize_disable Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_normalize_disable Method in class mmLib.R3DDriver.Raster3DDriver
glr_normalize_enable Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_normalize_enable Method in class mmLib.R3DDriver.Raster3DDriver
glr_pop_matrix Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_pop_matrix Method in class mmLib.R3DDriver.Raster3DDriver
glr_push_matrix Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_push_matrix Method in class mmLib.R3DDriver.Raster3DDriver
glr_render_begin Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_render_begin Method in class mmLib.R3DDriver.Raster3DDriver
glr_render_end Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_render_end Method in class mmLib.R3DDriver.Raster3DDriver
glr_rotate_axis Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_rotate_axis Method in class mmLib.R3DDriver.Raster3DDriver
glr_set_line_width Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_set_line_width Method in class mmLib.R3DDriver.Raster3DDriver
glr_set_material_rgb Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_set_material_rgb Method in class mmLib.R3DDriver.Raster3DDriver
glr_set_material_rgba Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_set_material_rgba Method in class mmLib.R3DDriver.Raster3DDriver
glr_set_render_png_path Method in class mmLib.R3DDriver.Raster3DDriver
glr_set_render_program_path Method in class mmLib.R3DDriver.Raster3DDriver
glr_set_render_stdin Method in class mmLib.R3DDriver.Raster3DDriver
glr_sphere Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_sphere Method in class mmLib.R3DDriver.Raster3DDriver
glr_text Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_text Method in class mmLib.R3DDriver.Raster3DDriver
glr_translate Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_translate Method in class mmLib.R3DDriver.Raster3DDriver
glr_translate3 Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_translate3 Method in class mmLib.R3DDriver.Raster3DDriver
glr_tube Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_tube Method in class mmLib.R3DDriver.Raster3DDriver
glr_Uaxes Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_Uaxes Method in class mmLib.R3DDriver.Raster3DDriver
glr_Uellipse Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_Uellipse Method in class mmLib.R3DDriver.Raster3DDriver
glr_Urms Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_Urms Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_vertex Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex3 Method in class mmLib.OpenGLDriver.OpenGLDriver
glr_vertex3 Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex_quads_1 Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex_quads_2 Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex_quads_3 Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex_quads_4 Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex_triangle_fan_1 Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex_triangle_fan_2 Method in class mmLib.R3DDriver.Raster3DDriver
glr_vertex_triangle_fan_3 Method in class mmLib.R3DDriver.Raster3DDriver
glr_write_objects Method in class mmLib.R3DDriver.Raster3DDriver
gls_add_chain Method in class mmLib.Viewer.GLStructure
GLStructure Class in module mmLib.Viewer
gltls_iter_atoms Method in class mmLib.TLS.GLTLSGroup
GLTLSAtomList Class in module mmLib.TLS
GLTLSChain Class in module mmLib.TLS
GLTLSGroup Class in module mmLib.TLS
GLUnitCell Class in module mmLib.Viewer
glv_add_draw_list Method in class mmLib.Viewer.GLViewer
glv_add_struct Method in class mmLib.Viewer.GLViewer
glv_background_color_rgbf Method in class mmLib.Viewer.GLViewer
glv_calc_struct_orientation Method in class mmLib.Viewer.GLViewer
glv_clip Method in class mmLib.Viewer.GLViewer
glv_init Method in class mmLib.Viewer.GLViewer
glv_redraw Method in class mmLib.Viewer.GLViewer
glv_remove_draw_list Method in class mmLib.Viewer.GLViewer
glv_render Method in class mmLib.Viewer.GLViewer
glv_render_one Method in class mmLib.Viewer.GLViewer
glv_resize Method in class mmLib.Viewer.GLViewer
glv_straif Method in class mmLib.Viewer.GLViewer
glv_trackball Method in class mmLib.Viewer.GLViewer
glv_update_cb Method in class mmLib.Viewer.GLViewer
glv_zoom Method in class mmLib.Viewer.GLViewer
GLViewer Class in module mmLib.Viewer
goodness_color Function in module mmLib.TLS
has_amino_acids Method in class mmLib.Structure.Model
has_amino_acids Method in class mmLib.Structure.Segment
has_amino_acids Method in class mmLib.Structure.Structure
has_column Method in class mmLib.mmCIF.mmCIFTable
has_key Method in class __builtin__.dict
has_key Method in class mmLib.mmCIF.mmCIFData
has_key Method in class mmLib.mmCIF.mmCIFFile
has_key Method in class mmLib.mmCIF.mmCIFRow
has_key_lower Method in class mmLib.mmCIF.mmCIFRow
has_non_standard_residues Method in class mmLib.Structure.Model
has_non_standard_residues Method in class mmLib.Structure.Segment
has_non_standard_residues Method in class mmLib.Structure.Structure
has_nucleic_acids Method in class mmLib.Structure.Model
has_nucleic_acids Method in class mmLib.Structure.Segment
has_nucleic_acids Method in class mmLib.Structure.Structure
has_standard_residues Method in class mmLib.Structure.Model
has_standard_residues Method in class mmLib.Structure.Segment
has_standard_residues Method in class mmLib.Structure.Structure
has_table Method in class mmLib.mmCIF.mmCIFData
has_waters Method in class mmLib.Structure.Model
has_waters Method in class mmLib.Structure.Segment
has_waters Method in class mmLib.Structure.Structure
HEADER Class in module mmLib.PDB
HELIX Class in module mmLib.PDB
HELIX_CLASS_LIST Variable in module mmLib.PDBBuilder
HET Class in module mmLib.PDB
HETATM Class in module mmLib.PDB
HETNAM Class in module mmLib.PDB
HETSYN Class in module mmLib.PDB
HYDBND Class in module mmLib.PDB
identity Function in module mmLib.NumericCompat
index Method in class __builtin__.list
index Method in class mmLib.Structure.Fragment
index Method in class mmLib.Structure.Model
index Method in class mmLib.Structure.Segment
index Method in class mmLib.Structure.Structure
insert Method in class __builtin__.list
insert Method in class mmLib.PDB.PDBFile
insert Method in class mmLib.mmCIF.mmCIFData
insert Method in class mmLib.mmCIF.mmCIFFile
insert Method in class mmLib.mmCIF.mmCIFTable
is_amino_acid Method in class mmLib.Library.MonomerDesc
is_amino_acid Method in class mmLib.Structure.AminoAcidResidue
is_amino_acid Method in class mmLib.Structure.Fragment
is_cis Method in class mmLib.Structure.AminoAcidResidue
is_homolog Method in class mmLib.Structure.Segment
is_non_standard_residue Method in class mmLib.Library.MonomerDesc
is_nucleic_acid Method in class mmLib.Library.MonomerDesc
is_nucleic_acid Method in class mmLib.Structure.Fragment
is_nucleic_acid Method in class mmLib.Structure.NucleicAcidResidue
is_null Method in class mmLib.TLS.TLSGroup
is_null Method in class mmLib.TLS.TLSGroupDesc
is_single Method in class mmLib.mmCIF.mmCIFTable
is_standard_residue Method in class mmLib.Library.MonomerDesc
is_standard_residue Method in class mmLib.Structure.AminoAcidResidue
is_standard_residue Method in class mmLib.Structure.Fragment
is_standard_residue Method in class mmLib.Structure.NucleicAcidResidue
is_water Method in class mmLib.Library.MonomerDesc
is_water Method in class mmLib.Structure.AminoAcidResidue
is_water Method in class mmLib.Structure.Fragment
is_water Method in class mmLib.Structure.NucleicAcidResidue
items Method in class __builtin__.dict
iter_all Method in class mmLib.GeometryDict.XYZDict
iter_all_amino_acids Method in class mmLib.Structure.Structure
iter_all_atoms Method in class mmLib.Structure.AlphaHelix
iter_all_atoms Method in class mmLib.Structure.BetaSheet
iter_all_atoms Method in class mmLib.Structure.Fragment
iter_all_atoms Method in class mmLib.Structure.Model
iter_all_atoms Method in class mmLib.Structure.Segment
iter_all_atoms Method in class mmLib.Structure.Site
iter_all_atoms Method in class mmLib.Structure.Strand
iter_all_atoms Method in class mmLib.Structure.Structure
iter_all_chains Method in class mmLib.Structure.Structure
iter_all_fragments Method in class mmLib.Structure.Structure
iter_all_nucleic_acids Method in class mmLib.Structure.Structure
iter_alpha_helicies Method in class mmLib.Structure.Model
iter_alpha_helicies Method in class mmLib.Structure.Structure
iter_alt_loc Method in class mmLib.Structure.Atom
iter_amino_acids Method in class mmLib.Structure.Model
iter_amino_acids Method in class mmLib.Structure.Segment
iter_amino_acids Method in class mmLib.Structure.Structure
iter_atm_Utls Method in class mmLib.TLS.TLSGroup
iter_atoms Method in class mmLib.Structure.AlphaHelix
iter_atoms Method in class mmLib.Structure.BetaSheet
iter_atoms Method in class mmLib.Structure.Fragment
iter_atoms Method in class mmLib.Structure.Model
iter_atoms Method in class mmLib.Structure.Segment
iter_atoms Method in class mmLib.Structure.Site
iter_atoms Method in class mmLib.Structure.Strand
iter_atoms Method in class mmLib.Structure.Structure
iter_atoms Method in class mmLib.TLS.TLSGroupDesc
iter_atoms_by_distance Method in class mmLib.Structure.Atom
iter_beta_sheets Method in class mmLib.Structure.Model
iter_beta_sheets Method in class mmLib.Structure.Structure
iter_bonded_atoms Method in class mmLib.Structure.Atom
iter_bonds Method in class mmLib.Structure.Atom
iter_bonds Method in class mmLib.Structure.Fragment
iter_bonds Method in class mmLib.Structure.Model
iter_bonds Method in class mmLib.Structure.Segment
iter_bonds Method in class mmLib.Structure.Structure
iter_chains Method in class mmLib.Structure.Model
iter_chains Method in class mmLib.Structure.Structure
iter_contact_distance Method in class mmLib.GeometryDict.XYZDict
iter_cube_intersection Method in class mmLib.GeometryDict.XYZDict
iter_fit_TLS_segments Method in class mmLib.TLS.TLSStructureAnalysis
iter_fragments Method in class mmLib.Structure.AlphaHelix
iter_fragments Method in class mmLib.Structure.BetaSheet
iter_fragments Method in class mmLib.Structure.Model
iter_fragments Method in class mmLib.Structure.Segment
iter_fragments Method in class mmLib.Structure.Site
iter_fragments Method in class mmLib.Structure.Strand
iter_fragments Method in class mmLib.Structure.Structure
iter_fragments Function in module mmLib.Structure
iter_itls_uiso Function in module mmLib.TLS
iter_models Method in class mmLib.Structure.Structure
iter_non_standard_residues Method in class mmLib.Structure.Model
iter_non_standard_residues Method in class mmLib.Structure.Segment
iter_non_standard_residues Method in class mmLib.Structure.Structure
iter_nucleic_acids Method in class mmLib.Structure.Model
iter_nucleic_acids Method in class mmLib.Structure.Segment
iter_nucleic_acids Method in class mmLib.Structure.Structure
iter_orth_symops Method in class mmLib.Viewer.GLStructure
iter_pdb_records Function in module mmLib.PDB
iter_rows Method in class mmLib.mmCIF.mmCIFTable
iter_segments Method in class mmLib.TLS.TLSStructureAnalysis
iter_sequence Method in class mmLib.Structure.Chain
iter_sites Method in class mmLib.Structure.Model
iter_sites Method in class mmLib.Structure.Structure
iter_sphere_intersection Method in class mmLib.GeometryDict.XYZDict
iter_standard_residues Method in class mmLib.Structure.Model
iter_standard_residues Method in class mmLib.Structure.Segment
iter_standard_residues Method in class mmLib.Structure.Structure
iter_strands Method in class mmLib.Structure.BetaSheet
iter_struct_orth_symops Method in class mmLib.UnitCell.UnitCell
iter_three_letter Method in class mmLib.Sequence.Sequence
iter_waters Method in class mmLib.Structure.Model
iter_waters Method in class mmLib.Structure.Segment
iter_waters Method in class mmLib.Structure.Structure
iteritems Method in class __builtin__.dict
iterkeys Method in class __builtin__.dict
itervalues Method in class __builtin__.dict
join_tag Method in class mmLib.mmCIF.mmCIFData
JRNL Class in module mmLib.PDB
keys Method in class __builtin__.dict
KEYWDS Class in module mmLib.PDB
length Function in module mmLib.AtomMath
Library Module in package mmLib
library_construct_element_desc Function in module mmLib.Library
library_construct_monomer_desc Function in module mmLib.Library
library_get_element_desc Function in module mmLib.Library
library_get_monomer_desc Function in module mmLib.Library
library_guess_element_from_name Function in module mmLib.Library
library_is_amino_acid Function in module mmLib.Library
library_is_nucleic_acid Function in module mmLib.Library
library_is_water Function in module mmLib.Library
LINK Class in module mmLib.PDB
list Class in module __builtin__
load Method in class mmLib.TLS.TLSFile
load Method in class mmLib.TLS.TLSFileFormat
load Method in class mmLib.TLS.TLSFileFormatPDB
load Method in class mmLib.TLS.TLSFileFormatTLSOUT
load_alpha_helicies Method in class mmLib.StructureBuilder.StructureBuilder
load_atom Method in class mmLib.PDBBuilder.PDBStructureBuilder
load_atom Method in class mmLib.StructureBuilder.StructureBuilder
load_beta_sheets Method in class mmLib.StructureBuilder.StructureBuilder
load_bonds Method in class mmLib.StructureBuilder.StructureBuilder
load_file Method in class mmLib.PDB.PDBFile
load_file Method in class mmLib.mmCIF.mmCIFFile
load_sequence Method in class mmLib.StructureBuilder.StructureBuilder
load_sites Method in class mmLib.StructureBuilder.StructureBuilder
load_structure_id Method in class mmLib.StructureBuilder.StructureBuilder
load_supported Method in class mmLib.TLS.TLSFileFormat
load_supported Method in class mmLib.TLS.TLSFileFormatPDB
load_supported Method in class mmLib.TLS.TLSFileFormatTLSOUT
load_unit_cell Method in class mmLib.StructureBuilder.StructureBuilder
LoadStructure Function in module mmLib.FileIO
MARGIN Variable in module mmLib.R3DDriver
MASTER Class in module mmLib.PDB
matrixmultiply43 Function in module mmLib.R3DDriver
MAX_LINE Variable in module mmLib.mmCIF
mmCIF Module in package mmLib
mmCIFBuilder Module in package mmLib
mmCIFData Class in module mmLib.mmCIF
mmCIFDB Module in package mmLib
mmCIFDB Class in module mmLib.mmCIFDB
mmCIFDictionary Class in module mmLib.mmCIF
mmCIFError Class in module mmLib.mmCIF
mmCIFFile Class in module mmLib.mmCIF
mmCIFFileBuilder Class in module mmLib.mmCIFBuilder
mmCIFFileParser Class in module mmLib.mmCIF
mmCIFFileWriter Class in module mmLib.mmCIF
mmCIFRow Class in module mmLib.mmCIF
mmCIFSave Class in module mmLib.mmCIF
mmCIFStructureBuilder Class in module mmLib.mmCIFBuilder
mmCIFSyntaxError Class in module mmLib.mmCIF
mmCIFTable Class in module mmLib.mmCIF
mmLib Package
MMLIB_MONOMER_DATA_PATH Variable in module mmLib.Library
MMLIB_MONOMERS_CIF Variable in module mmLib.Library
MODEL Class in module mmLib.PDB
Model Class in module mmLib.Structure
ModelOverwrite Class in module mmLib.Structure
MODRES Class in module mmLib.PDB
MONOMER_RES_NAME_CACHE Variable in module mmLib.Library
MonomerDesc Class in module mmLib.Library
mro Method in class __builtin__.type
MTRIX1 Class in module mmLib.PDB
MTRIX2 Class in module mmLib.PDB
MTRIX3 Class in module mmLib.PDB
MTRIXn Class in module mmLib.PDB
name Variable in class mmLib.mmCIF.mmCIFData
name Variable in class mmLib.mmCIF.mmCIFData
name Variable in class mmLib.mmCIF.mmCIFData
name Variable in class mmLib.mmCIF.mmCIFTable
name_service Method in class mmLib.StructureBuilder.StructureBuilder
new_atom_serial Method in class mmLib.PDBBuilder.PDBFileBuilder
new_data Method in class mmLib.mmCIF.mmCIFFile
new_row Method in class mmLib.mmCIF.mmCIFTable
new_table Method in class mmLib.mmCIF.mmCIFData
next_serial_number Method in class mmLib.PDBBuilder.PDBFileBuilder
normalize Function in module mmLib.AtomMath
NUCLEIC_ACID_LIST Variable in module mmLib.Library
NUCLEIC_ACID_RES_NAME_DICT Variable in module mmLib.Library
NucleicAcidResidue Class in module mmLib.Structure
NumericCompat Module in package mmLib
object Class in module __builtin__
OBSLTE Class in module mmLib.PDB
one_letter_code Method in class mmLib.Sequence.Sequence
open_fileobj Function in module mmLib.FileIO
OpenFile Function in module mmLib.FileIO
OpenGLDriver Module in package mmLib
OpenGLDriver Class in module mmLib.OpenGLDriver
ORIGX1 Class in module mmLib.PDB
ORIGX2 Class in module mmLib.PDB
ORIGX3 Class in module mmLib.PDB
ORIGXn Class in module mmLib.PDB
parse Method in class mmLib.mmCIF.mmCIFFileParser
parse_file Method in class mmLib.mmCIF.mmCIFFileParser
PDB Module in package mmLib
pdb_error Method in class mmLib.PDBBuilder.PDBStructureBuilder
pdb_regex_dict Variable in class mmLib.TLS.TLSFileFormatPDB
PDBBuilder Module in package mmLib
PDBError Class in module mmLib.PDB
PDBFile Class in module mmLib.PDB
PDBFileBuilder Class in module mmLib.PDBBuilder
PDBRecord Class in module mmLib.PDB
PDBRecordMap Variable in module mmLib.PDB
PDBRecordOrder Variable in module mmLib.PDB
PDBStructureBuilder Class in module mmLib.PDBBuilder
PDBValueError Class in module mmLib.PDB
PI Variable in module mmLib.Constants
PI2 Variable in module mmLib.Constants
PI3 Variable in module mmLib.Constants
pop Method in class __builtin__.dict
pop Method in class __builtin__.list
popitem Method in class __builtin__.dict
preprocess_AUTHOR Method in class mmLib.PDBBuilder.PDBStructureBuilder
preprocess_COMPND Method in class mmLib.PDBBuilder.PDBStructureBuilder
preprocess_default Method in class mmLib.PDB.RecordProcessor
preprocess_EXPDTA Method in class mmLib.PDBBuilder.PDBStructureBuilder
preprocess_KEYWDS Method in class mmLib.PDBBuilder.PDBStructureBuilder
preprocess_SEQRES Method in class mmLib.PDBBuilder.PDBStructureBuilder
preprocess_SOURCE Method in class mmLib.PDBBuilder.PDBStructureBuilder
preprocess_TITLE Method in class mmLib.PDBBuilder.PDBStructureBuilder
process Method in class mmLib.PDB.AUTHOR
process Method in class mmLib.PDB.CAVEAT
process Method in class mmLib.PDB.COMPND
process Method in class mmLib.PDB.EXPDTA
process Method in class mmLib.PDB.KEYWDS
process Method in class mmLib.PDB.OBSLTE
process Method in class mmLib.PDB.REVDAT
process Method in class mmLib.PDB.SEQRES
process Method in class mmLib.PDB.SOURCE
process Method in class mmLib.PDB.SPRSDE
process Method in class mmLib.PDB.TITLE
process_ANISOU Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_ATOM Method in class mmLib.PDB.RecordProcessor
process_ATOM Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_CONECT Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_CRYST1 Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_default Method in class mmLib.PDB.RecordProcessor
process_ENDMDL Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_HEADER Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_HELIX Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_HETATM Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_HYDBND Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_LINK Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_MODEL Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_pdb_records Method in class mmLib.PDB.RecordProcessor
process_REMARK Method in class mmLib.TLS.TLSFileFormatPDB
process_SHEET Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_SIGATM Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_SIGUIJ Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_SITE Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_SLTBRG Method in class mmLib.PDBBuilder.PDBStructureBuilder
process_SSBOND Method in class mmLib.PDBBuilder.PDBStructureBuilder
PROP_FRAC_RANGE Variable in module mmLib.Viewer
PROP_LINE_RANGE Variable in module mmLib.Viewer
PROP_OPACITY_RANGE Variable in module mmLib.Viewer
PROP_PROBABILTY_RANGE Variable in module mmLib.Viewer
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
PropertyDefault Variable in class mmLib.Viewer.GLObject
quaternionrmatrix Function in module mmLib.AtomMath
QuaternionToRotationMatrix Function in module mmLib.Superposition
R3DDriver Module in package mmLib
RAD2DEG Variable in module mmLib.Constants
RAD2DEG2 Variable in module mmLib.Constants
Raster3DDriver Class in module mmLib.R3DDriver
RCSB_MONOMER_DATA_FILE Variable in module mmLib.Library
RCSB_MONOMER_DATA_PATH Variable in module mmLib.Library
RCSB_USE_ZIP Variable in module mmLib.Library
RCSB_ZIP Variable in module mmLib.Library
read Method in class mmLib.PDB.PDBRecord
read_atoms Method in class mmLib.PDBBuilder.PDBStructureBuilder
read_atoms Method in class mmLib.StructureBuilder.StructureBuilder
read_atoms Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
read_atoms_finalize Method in class mmLib.StructureBuilder.StructureBuilder
read_end Method in class mmLib.StructureBuilder.StructureBuilder
read_end_finalize Method in class mmLib.StructureBuilder.StructureBuilder
read_metadata Method in class mmLib.PDBBuilder.PDBStructureBuilder
read_metadata Method in class mmLib.StructureBuilder.StructureBuilder
read_metadata Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
read_metadata_finalize Method in class mmLib.StructureBuilder.StructureBuilder
read_sequence Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
read_start Method in class mmLib.PDBBuilder.PDBStructureBuilder
read_start Method in class mmLib.StructureBuilder.StructureBuilder
read_start Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
read_start_finalize Method in class mmLib.StructureBuilder.StructureBuilder
read_struct_conf Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
read_struct_conn Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
read_structure_id Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
read_unit_cell Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
readlines Method in class mmLib.FileIO.ZCat
reccat Method in class mmLib.PDB.PDBRecord
reccat_dictlist Method in class mmLib.PDB.PDBRecord
reccat_list Method in class mmLib.PDB.PDBRecord
reccat_multi Method in class mmLib.PDB.PDBRecord
reccat_tuplelist Method in class mmLib.PDB.PDBRecord
RecordProcessor Class in module mmLib.PDB
REMARK Class in module mmLib.PDB
remove Method in class __builtin__.list
remove Method in class mmLib.GeometryDict.XYZDict
remove Method in class mmLib.mmCIF.mmCIFData
remove Method in class mmLib.mmCIF.mmCIFTable
remove_alpha_helix Method in class mmLib.Structure.Model
remove_alt_loc Method in class mmLib.Structure.Atom
remove_atom Method in class mmLib.Structure.Altloc
remove_atom Method in class mmLib.Structure.Fragment
remove_atom Method in class mmLib.Structure.Model
remove_atom Method in class mmLib.Structure.Segment
remove_atom Method in class mmLib.Structure.Structure
remove_beta_sheet Method in class mmLib.Structure.Model
remove_chain Method in class mmLib.Structure.Model
remove_chain Method in class mmLib.Structure.Structure
remove_column Method in class mmLib.mmCIF.mmCIFTable
remove_fragment Method in class mmLib.Structure.Chain
remove_fragment Method in class mmLib.Structure.Model
remove_fragment Method in class mmLib.Structure.Segment
remove_fragment Method in class mmLib.Structure.Structure
remove_model Method in class mmLib.Structure.Structure
remove_sequence Method in class mmLib.Structure.Chain
remove_site Method in class mmLib.Structure.Model
Residue Class in module mmLib.Structure
REVDAT Class in module mmLib.PDB
reverse Method in class __builtin__.list
rgbf2rgbi Function in module mmLib.Colors
rgbi2rgbf Function in module mmLib.Colors
rmatrix Function in module mmLib.AtomMath
rmatrixquaternion Function in module mmLib.AtomMath
rmatrixu Function in module mmLib.AtomMath
rmatrixz Function in module mmLib.AtomMath
Rot_mX_mXY_mZ Variable in module mmLib.SpaceGroups
Rot_mX_mXY_Z Variable in module mmLib.SpaceGroups
Rot_mX_mY_mZ Variable in module mmLib.SpaceGroups
Rot_mX_mY_Z Variable in module mmLib.SpaceGroups
Rot_mX_mZ_mY Variable in module mmLib.SpaceGroups
Rot_mX_mZ_Y Variable in module mmLib.SpaceGroups
Rot_mX_Y_mZ Variable in module mmLib.SpaceGroups
Rot_mX_Y_Z Variable in module mmLib.SpaceGroups
Rot_mX_Z_mY Variable in module mmLib.SpaceGroups
Rot_mX_Z_Y Variable in module mmLib.SpaceGroups
Rot_mXY_mX_mZ Variable in module mmLib.SpaceGroups
Rot_mXY_mX_Z Variable in module mmLib.SpaceGroups
Rot_mXY_Y_mZ Variable in module mmLib.SpaceGroups
Rot_mXY_Y_Z Variable in module mmLib.SpaceGroups
Rot_mY_mX_mZ Variable in module mmLib.SpaceGroups
Rot_mY_mX_Z Variable in module mmLib.SpaceGroups
Rot_mY_mZ_mX Variable in module mmLib.SpaceGroups
Rot_mY_mZ_X Variable in module mmLib.SpaceGroups
Rot_mY_X_mZ Variable in module mmLib.SpaceGroups
Rot_mY_X_Z Variable in module mmLib.SpaceGroups
Rot_mY_XmY_mZ Variable in module mmLib.SpaceGroups
Rot_mY_XmY_Z Variable in module mmLib.SpaceGroups
Rot_mY_Z_mX Variable in module mmLib.SpaceGroups
Rot_mY_Z_X Variable in module mmLib.SpaceGroups
Rot_mZ_mX_mY Variable in module mmLib.SpaceGroups
Rot_mZ_mX_Y Variable in module mmLib.SpaceGroups
Rot_mZ_mY_mX Variable in module mmLib.SpaceGroups
Rot_mZ_mY_X Variable in module mmLib.SpaceGroups
Rot_mZ_X_mY Variable in module mmLib.SpaceGroups
Rot_mZ_X_Y Variable in module mmLib.SpaceGroups
Rot_mZ_Y_mX Variable in module mmLib.SpaceGroups
Rot_mZ_Y_X Variable in module mmLib.SpaceGroups
Rot_X_mY_mZ Variable in module mmLib.SpaceGroups
Rot_X_mY_Z Variable in module mmLib.SpaceGroups
Rot_X_mZ_mY Variable in module mmLib.SpaceGroups
Rot_X_mZ_Y Variable in module mmLib.SpaceGroups
Rot_X_XmY_mZ Variable in module mmLib.SpaceGroups
Rot_X_XmY_Z Variable in module mmLib.SpaceGroups
Rot_X_Y_mZ Variable in module mmLib.SpaceGroups
Rot_X_Y_Z Variable in module mmLib.SpaceGroups
Rot_X_Z_mY Variable in module mmLib.SpaceGroups
Rot_X_Z_Y Variable in module mmLib.SpaceGroups
Rot_XmY_mY_mZ Variable in module mmLib.SpaceGroups
Rot_XmY_mY_Z Variable in module mmLib.SpaceGroups
Rot_XmY_X_mZ Variable in module mmLib.SpaceGroups
Rot_XmY_X_Z Variable in module mmLib.SpaceGroups
Rot_Y_mX_mZ Variable in module mmLib.SpaceGroups
Rot_Y_mX_Z Variable in module mmLib.SpaceGroups
Rot_Y_mXY_mZ Variable in module mmLib.SpaceGroups
Rot_Y_mXY_Z Variable in module mmLib.SpaceGroups
Rot_Y_mZ_mX Variable in module mmLib.SpaceGroups
Rot_Y_mZ_X Variable in module mmLib.SpaceGroups
Rot_Y_X_mZ Variable in module mmLib.SpaceGroups
Rot_Y_X_Z Variable in module mmLib.SpaceGroups
Rot_Y_Z_mX Variable in module mmLib.SpaceGroups
Rot_Y_Z_X Variable in module mmLib.SpaceGroups
Rot_Z_mX_mY Variable in module mmLib.SpaceGroups
Rot_Z_mX_Y Variable in module mmLib.SpaceGroups
Rot_Z_mY_mX Variable in module mmLib.SpaceGroups
Rot_Z_mY_X Variable in module mmLib.SpaceGroups
Rot_Z_X_mY Variable in module mmLib.SpaceGroups
Rot_Z_X_Y Variable in module mmLib.SpaceGroups
Rot_Z_Y_mX Variable in module mmLib.SpaceGroups
Rot_Z_Y_X Variable in module mmLib.SpaceGroups
row_index_dict Method in class mmLib.mmCIF.mmCIFTable
rquaternionu Function in module mmLib.AtomMath
save Method in class mmLib.TLS.TLSFile
save Method in class mmLib.TLS.TLSFileFormat
save Method in class mmLib.TLS.TLSFileFormatTLSOUT
save_file Method in class mmLib.PDB.PDBFile
save_file Method in class mmLib.mmCIF.mmCIFFile
save_supported Method in class mmLib.TLS.TLSFileFormat
save_supported Method in class mmLib.TLS.TLSFileFormatTLSOUT
SaveStructure Function in module mmLib.FileIO
SCALE1 Class in module mmLib.PDB
SCALE2 Class in module mmLib.PDB
SCALE3 Class in module mmLib.PDB
SCALEn Class in module mmLib.PDB
Segment Class in module mmLib.Structure
SEQADV Class in module mmLib.PDB
SEQRES Class in module mmLib.PDB
Sequence Module in package mmLib
Sequence Class in module mmLib.Sequence
set_atom_site_auth Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
set_atom_site_data_columns Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
set_atom_site_label Method in class mmLib.mmCIFBuilder.mmCIFStructureBuilder
set_atom_site_row Method in class mmLib.mmCIFBuilder.mmCIFFileBuilder
set_chain_id Method in class mmLib.Structure.Atom
set_chain_id Method in class mmLib.Structure.Chain
set_chain_id Method in class mmLib.Structure.Fragment
set_chain_id Method in class mmLib.Structure.Segment
set_columns Method in class mmLib.mmCIF.mmCIFTable
set_default_alt_loc Method in class mmLib.Structure.Fragment
set_default_alt_loc Method in class mmLib.Structure.Structure
set_default_model Method in class mmLib.Structure.Structure
set_deposition_date Method in class mmLib.mmCIFDB.mmCIFDB
set_entry_id Method in class mmLib.mmCIFDB.mmCIFDB
set_file_format Method in class mmLib.TLS.TLSFile
set_fragment_id Method in class mmLib.Structure.Atom
set_fragment_id Method in class mmLib.Structure.Fragment
set_from_cifdb Method in class mmLib.PDBBuilder.PDBFileBuilder
set_from_fragments Method in class mmLib.Sequence.Sequence
set_from_three_letter Method in class mmLib.Sequence.Sequence
set_L Method in class mmLib.TLS.TLSGroup
set_L Method in class mmLib.TLS.TLSGroupDesc
set_L_A Function in module mmLib.TLS
set_L_deg2 Method in class mmLib.TLS.TLSGroupDesc
set_model Method in class mmLib.Structure.Structure
set_model_id Method in class mmLib.Structure.Atom
set_model_id Method in class mmLib.Structure.Fragment
set_model_id Method in class mmLib.Structure.Model
set_model_id Method in class mmLib.Structure.Segment
set_name Method in class mmLib.TLS.TLSGroupDesc
set_origin Method in class mmLib.TLS.TLSGroup
set_origin Method in class mmLib.TLS.TLSGroupDesc
set_res_name Method in class mmLib.Structure.Atom
set_res_name Method in class mmLib.Structure.Fragment
set_S Method in class mmLib.TLS.TLSGroup
set_S Method in class mmLib.TLS.TLSGroupDesc
set_S_deg Method in class mmLib.TLS.TLSGroupDesc
set_sequence Method in class mmLib.Structure.Chain
set_sig_U Method in class mmLib.Structure.Atom
set_single Method in class mmLib.mmCIFDB.mmCIFDB
set_struct_keywords Method in class mmLib.mmCIFDB.mmCIFDB
set_style1 Method in class mmLib.TLS.GLTLSChain
set_T Method in class mmLib.TLS.TLSGroup
set_T Method in class mmLib.TLS.TLSGroupDesc
set_tag Method in class mmLib.mmCIF.mmCIFData
set_TLS_A Function in module mmLib.TLS
set_TLS_b Function in module mmLib.TLS
set_tls_group Method in class mmLib.TLS.TLSGroupDesc
set_tls_groupXXX Method in class mmLib.TLS.GLTLSGroup
set_TLSiso_A Function in module mmLib.TLS
set_TLSiso_b Function in module mmLib.TLS
set_U Method in class mmLib.Structure.Atom
SetConsoleOutputObject Function in module mmLib.ConsoleOutput
setdefault Method in class __builtin__.dict
setmap Function in module mmLib.PDBBuilder
setmapf Function in module mmLib.PDBBuilder
setmapf_cif Function in module mmLib.mmCIFBuilder
setmapi Function in module mmLib.PDBBuilder
setmapi_cif Function in module mmLib.mmCIFBuilder
setmaps Function in module mmLib.PDBBuilder
setmaps_cif Function in module mmLib.mmCIFBuilder
sg1 Variable in module mmLib.SpaceGroups
sg10 Variable in module mmLib.SpaceGroups
sg100 Variable in module mmLib.SpaceGroups
sg1003 Variable in module mmLib.SpaceGroups
sg1004 Variable in module mmLib.SpaceGroups
sg1005 Variable in module mmLib.SpaceGroups
sg1006 Variable in module mmLib.SpaceGroups
sg1007 Variable in module mmLib.SpaceGroups
sg1008 Variable in module mmLib.SpaceGroups
sg1009 Variable in module mmLib.SpaceGroups
sg101 Variable in module mmLib.SpaceGroups
sg1010 Variable in module mmLib.SpaceGroups
sg1011 Variable in module mmLib.SpaceGroups
sg1012 Variable in module mmLib.SpaceGroups
sg1013 Variable in module mmLib.SpaceGroups
sg1014 Variable in module mmLib.SpaceGroups
sg1015 Variable in module mmLib.SpaceGroups
sg1017 Variable in module mmLib.SpaceGroups
sg1018 Variable in module mmLib.SpaceGroups
sg102 Variable in module mmLib.SpaceGroups
sg1020 Variable in module mmLib.SpaceGroups
sg1021 Variable in module mmLib.SpaceGroups
sg1022 Variable in module mmLib.SpaceGroups
sg1023 Variable in module mmLib.SpaceGroups
sg103 Variable in module mmLib.SpaceGroups
sg104 Variable in module mmLib.SpaceGroups
sg105 Variable in module mmLib.SpaceGroups
sg1059 Variable in module mmLib.SpaceGroups
sg106 Variable in module mmLib.SpaceGroups
sg107 Variable in module mmLib.SpaceGroups
sg108 Variable in module mmLib.SpaceGroups
sg109 Variable in module mmLib.SpaceGroups
sg1094 Variable in module mmLib.SpaceGroups
sg11 Variable in module mmLib.SpaceGroups
sg110 Variable in module mmLib.SpaceGroups
sg111 Variable in module mmLib.SpaceGroups
sg112 Variable in module mmLib.SpaceGroups
sg113 Variable in module mmLib.SpaceGroups
sg114 Variable in module mmLib.SpaceGroups
sg1146 Variable in module mmLib.SpaceGroups
sg1148 Variable in module mmLib.SpaceGroups
sg115 Variable in module mmLib.SpaceGroups
sg1155 Variable in module mmLib.SpaceGroups
sg116 Variable in module mmLib.SpaceGroups
sg1160 Variable in module mmLib.SpaceGroups
sg1161 Variable in module mmLib.SpaceGroups
sg1166 Variable in module mmLib.SpaceGroups
sg1167 Variable in module mmLib.SpaceGroups
sg117 Variable in module mmLib.SpaceGroups
sg118 Variable in module mmLib.SpaceGroups
sg119 Variable in module mmLib.SpaceGroups
sg1197 Variable in module mmLib.SpaceGroups
sg12 Variable in module mmLib.SpaceGroups
sg120 Variable in module mmLib.SpaceGroups
sg121 Variable in module mmLib.SpaceGroups
sg122 Variable in module mmLib.SpaceGroups
sg123 Variable in module mmLib.SpaceGroups
sg124 Variable in module mmLib.SpaceGroups
sg125 Variable in module mmLib.SpaceGroups
sg126 Variable in module mmLib.SpaceGroups
sg127 Variable in module mmLib.SpaceGroups
sg128 Variable in module mmLib.SpaceGroups
sg129 Variable in module mmLib.SpaceGroups
sg13 Variable in module mmLib.SpaceGroups
sg130 Variable in module mmLib.SpaceGroups
sg131 Variable in module mmLib.SpaceGroups
sg132 Variable in module mmLib.SpaceGroups
sg133 Variable in module mmLib.SpaceGroups
sg134 Variable in module mmLib.SpaceGroups
sg135 Variable in module mmLib.SpaceGroups
sg136 Variable in module mmLib.SpaceGroups
sg137 Variable in module mmLib.SpaceGroups
sg138 Variable in module mmLib.SpaceGroups
sg139 Variable in module mmLib.SpaceGroups
sg14 Variable in module mmLib.SpaceGroups
sg140 Variable in module mmLib.SpaceGroups
sg141 Variable in module mmLib.SpaceGroups
sg142 Variable in module mmLib.SpaceGroups
sg143 Variable in module mmLib.SpaceGroups
sg144 Variable in module mmLib.SpaceGroups
sg145 Variable in module mmLib.SpaceGroups
sg146 Variable in module mmLib.SpaceGroups
sg147 Variable in module mmLib.SpaceGroups
sg148 Variable in module mmLib.SpaceGroups
sg149 Variable in module mmLib.SpaceGroups
sg15 Variable in module mmLib.SpaceGroups
sg150 Variable in module mmLib.SpaceGroups
sg151 Variable in module mmLib.SpaceGroups
sg152 Variable in module mmLib.SpaceGroups
sg153 Variable in module mmLib.SpaceGroups
sg154 Variable in module mmLib.SpaceGroups
sg155 Variable in module mmLib.SpaceGroups
sg156 Variable in module mmLib.SpaceGroups
sg157 Variable in module mmLib.SpaceGroups
sg158 Variable in module mmLib.SpaceGroups
sg159 Variable in module mmLib.SpaceGroups
sg16 Variable in module mmLib.SpaceGroups
sg160 Variable in module mmLib.SpaceGroups
sg161 Variable in module mmLib.SpaceGroups
sg162 Variable in module mmLib.SpaceGroups
sg163 Variable in module mmLib.SpaceGroups
sg164 Variable in module mmLib.SpaceGroups
sg165 Variable in module mmLib.SpaceGroups
sg166 Variable in module mmLib.SpaceGroups
sg167 Variable in module mmLib.SpaceGroups
sg168 Variable in module mmLib.SpaceGroups
sg169 Variable in module mmLib.SpaceGroups
sg17 Variable in module mmLib.SpaceGroups
sg170 Variable in module mmLib.SpaceGroups
sg171 Variable in module mmLib.SpaceGroups
sg172 Variable in module mmLib.SpaceGroups
sg173 Variable in module mmLib.SpaceGroups
sg174 Variable in module mmLib.SpaceGroups
sg175 Variable in module mmLib.SpaceGroups
sg176 Variable in module mmLib.SpaceGroups
sg177 Variable in module mmLib.SpaceGroups
sg178 Variable in module mmLib.SpaceGroups
sg179 Variable in module mmLib.SpaceGroups
sg18 Variable in module mmLib.SpaceGroups
sg180 Variable in module mmLib.SpaceGroups
sg181 Variable in module mmLib.SpaceGroups
sg182 Variable in module mmLib.SpaceGroups
sg183 Variable in module mmLib.SpaceGroups
sg184 Variable in module mmLib.SpaceGroups
sg185 Variable in module mmLib.SpaceGroups
sg186 Variable in module mmLib.SpaceGroups
sg187 Variable in module mmLib.SpaceGroups
sg188 Variable in module mmLib.SpaceGroups
sg189 Variable in module mmLib.SpaceGroups
sg19 Variable in module mmLib.SpaceGroups
sg190 Variable in module mmLib.SpaceGroups
sg191 Variable in module mmLib.SpaceGroups
sg192 Variable in module mmLib.SpaceGroups
sg193 Variable in module mmLib.SpaceGroups
sg194 Variable in module mmLib.SpaceGroups
sg195 Variable in module mmLib.SpaceGroups
sg196 Variable in module mmLib.SpaceGroups
sg197 Variable in module mmLib.SpaceGroups
sg198 Variable in module mmLib.SpaceGroups
sg199 Variable in module mmLib.SpaceGroups
sg2 Variable in module mmLib.SpaceGroups
sg20 Variable in module mmLib.SpaceGroups
sg200 Variable in module mmLib.SpaceGroups
sg2005 Variable in module mmLib.SpaceGroups
sg201 Variable in module mmLib.SpaceGroups
sg2017 Variable in module mmLib.SpaceGroups
sg2018 Variable in module mmLib.SpaceGroups
sg202 Variable in module mmLib.SpaceGroups
sg203 Variable in module mmLib.SpaceGroups
sg204 Variable in module mmLib.SpaceGroups
sg205 Variable in module mmLib.SpaceGroups
sg206 Variable in module mmLib.SpaceGroups
sg207 Variable in module mmLib.SpaceGroups
sg208 Variable in module mmLib.SpaceGroups
sg209 Variable in module mmLib.SpaceGroups
sg21 Variable in module mmLib.SpaceGroups
sg210 Variable in module mmLib.SpaceGroups
sg211 Variable in module mmLib.SpaceGroups
sg212 Variable in module mmLib.SpaceGroups
sg213 Variable in module mmLib.SpaceGroups
sg214 Variable in module mmLib.SpaceGroups
sg215 Variable in module mmLib.SpaceGroups
sg216 Variable in module mmLib.SpaceGroups
sg217 Variable in module mmLib.SpaceGroups
sg218 Variable in module mmLib.SpaceGroups
sg219 Variable in module mmLib.SpaceGroups
sg22 Variable in module mmLib.SpaceGroups
sg220 Variable in module mmLib.SpaceGroups
sg221 Variable in module mmLib.SpaceGroups
sg222 Variable in module mmLib.SpaceGroups
sg223 Variable in module mmLib.SpaceGroups
sg224 Variable in module mmLib.SpaceGroups
sg225 Variable in module mmLib.SpaceGroups
sg226 Variable in module mmLib.SpaceGroups
sg227 Variable in module mmLib.SpaceGroups
sg228 Variable in module mmLib.SpaceGroups
sg229 Variable in module mmLib.SpaceGroups
sg23 Variable in module mmLib.SpaceGroups
sg230 Variable in module mmLib.SpaceGroups
sg24 Variable in module mmLib.SpaceGroups
sg25 Variable in module mmLib.SpaceGroups
sg26 Variable in module mmLib.SpaceGroups
sg27 Variable in module mmLib.SpaceGroups
sg28 Variable in module mmLib.SpaceGroups
sg29 Variable in module mmLib.SpaceGroups
sg3 Variable in module mmLib.SpaceGroups
sg30 Variable in module mmLib.SpaceGroups
sg3004 Variable in module mmLib.SpaceGroups
sg3005 Variable in module mmLib.SpaceGroups
sg3018 Variable in module mmLib.SpaceGroups
sg31 Variable in module mmLib.SpaceGroups
sg32 Variable in module mmLib.SpaceGroups
sg33 Variable in module mmLib.SpaceGroups
sg34 Variable in module mmLib.SpaceGroups
sg35 Variable in module mmLib.SpaceGroups
sg36 Variable in module mmLib.SpaceGroups
sg37 Variable in module mmLib.SpaceGroups
sg38 Variable in module mmLib.SpaceGroups
sg39 Variable in module mmLib.SpaceGroups
sg4 Variable in module mmLib.SpaceGroups
sg40 Variable in module mmLib.SpaceGroups
sg41 Variable in module mmLib.SpaceGroups
sg42 Variable in module mmLib.SpaceGroups
sg43 Variable in module mmLib.SpaceGroups
sg44 Variable in module mmLib.SpaceGroups
sg45 Variable in module mmLib.SpaceGroups
sg46 Variable in module mmLib.SpaceGroups
sg47 Variable in module mmLib.SpaceGroups
sg48 Variable in module mmLib.SpaceGroups
sg49 Variable in module mmLib.SpaceGroups
sg5 Variable in module mmLib.SpaceGroups
sg50 Variable in module mmLib.SpaceGroups
sg51 Variable in module mmLib.SpaceGroups
sg52 Variable in module mmLib.SpaceGroups
sg53 Variable in module mmLib.SpaceGroups
sg54 Variable in module mmLib.SpaceGroups
sg55 Variable in module mmLib.SpaceGroups
sg56 Variable in module mmLib.SpaceGroups
sg57 Variable in module mmLib.SpaceGroups
sg58 Variable in module mmLib.SpaceGroups
sg59 Variable in module mmLib.SpaceGroups
sg6 Variable in module mmLib.SpaceGroups
sg60 Variable in module mmLib.SpaceGroups
sg61 Variable in module mmLib.SpaceGroups
sg62 Variable in module mmLib.SpaceGroups
sg63 Variable in module mmLib.SpaceGroups
sg64 Variable in module mmLib.SpaceGroups
sg65 Variable in module mmLib.SpaceGroups
sg66 Variable in module mmLib.SpaceGroups
sg67 Variable in module mmLib.SpaceGroups
sg68 Variable in module mmLib.SpaceGroups
sg69 Variable in module mmLib.SpaceGroups
sg7 Variable in module mmLib.SpaceGroups
sg70 Variable in module mmLib.SpaceGroups
sg71 Variable in module mmLib.SpaceGroups
sg72 Variable in module mmLib.SpaceGroups
sg73 Variable in module mmLib.SpaceGroups
sg74 Variable in module mmLib.SpaceGroups
sg75 Variable in module mmLib.SpaceGroups
sg76 Variable in module mmLib.SpaceGroups
sg77 Variable in module mmLib.SpaceGroups
sg78 Variable in module mmLib.SpaceGroups
sg79 Variable in module mmLib.SpaceGroups
sg8 Variable in module mmLib.SpaceGroups
sg80 Variable in module mmLib.SpaceGroups
sg81 Variable in module mmLib.SpaceGroups
sg82 Variable in module mmLib.SpaceGroups
sg83 Variable in module mmLib.SpaceGroups
sg84 Variable in module mmLib.SpaceGroups
sg85 Variable in module mmLib.SpaceGroups
sg86 Variable in module mmLib.SpaceGroups
sg87 Variable in module mmLib.SpaceGroups
sg88 Variable in module mmLib.SpaceGroups
sg89 Variable in module mmLib.SpaceGroups
sg9 Variable in module mmLib.SpaceGroups
sg90 Variable in module mmLib.SpaceGroups
sg91 Variable in module mmLib.SpaceGroups
sg92 Variable in module mmLib.SpaceGroups
sg93 Variable in module mmLib.SpaceGroups
sg94 Variable in module mmLib.SpaceGroups
sg95 Variable in module mmLib.SpaceGroups
sg96 Variable in module mmLib.SpaceGroups
sg97 Variable in module mmLib.SpaceGroups
sg98 Variable in module mmLib.SpaceGroups
sg99 Variable in module mmLib.SpaceGroups
SHEET Class in module mmLib.PDB
shift_COR Method in class mmLib.TLS.TLSGroup
SIGATM Class in module mmLib.PDB
SIGUIJ Class in module mmLib.PDB
SITE Class in module mmLib.PDB
Site Class in module mmLib.Structure
SLTBRG Class in module mmLib.PDB
solve_TLS_Ab Function in module mmLib.TLS
sort Method in class __builtin__.list
sort Method in class mmLib.Structure.Model
sort Method in class mmLib.Structure.Segment
sort Method in class mmLib.Structure.Structure
SOURCE Class in module mmLib.PDB
SpaceGroupList Variable in module mmLib.SpaceGroups
SpaceGroups Module in package mmLib
split_tag Method in class mmLib.mmCIF.mmCIFData
split_token Method in class mmLib.mmCIF.mmCIFFileParser
SPRSDE Class in module mmLib.PDB
SSBOND Class in module mmLib.PDB
str_old Method in class mmLib.TLS.TLSGroup
Strand Class in module mmLib.Structure
strRT Function in module mmLib.UnitCell
Structure Module in package mmLib
Structure Class in module mmLib.Structure
StructureBuilder Module in package mmLib
StructureBuilder Class in module mmLib.StructureBuilder
StructureBuilderError Class in module mmLib.StructureBuilder
StructureError Class in module mmLib.Structure
SuperimposeAtoms Function in module mmLib.Superposition
SuperimposeAtomsOutlierRejection Function in module mmLib.Superposition
SuperimposePoints Function in module mmLib.Superposition
SuperimposePositions Function in module mmLib.Superposition
Superposition Module in package mmLib
SuperpositionResults Class in module mmLib.Superposition
syntax_error Method in class mmLib.mmCIF.mmCIFFileParser
table Variable in class mmLib.mmCIF.mmCIFRow
TeeWrite Class in module mmLib.R3DDriver
TER Class in module mmLib.PDB
test_module Function in module mmLib.AtomMath
test_module Function in module mmLib.FileIO
test_module Function in module mmLib.GeometryDict
test_module Function in module mmLib.Library
test_module Function in module mmLib.PDB
test_module Function in module mmLib.Structure
test_module Function in module mmLib.Superposition
test_module Function in module mmLib.TLS
test_module Function in module mmLib.UnitCell
test_module Function in module mmLib.mmCIF
TITLE Class in module mmLib.PDB
TLS Module in package mmLib
tls_update_cb Method in class mmLib.TLS.GLTLSGroup
TLSError Class in module mmLib.TLS
TLSFile Class in module mmLib.TLS
TLSFileFormat Class in module mmLib.TLS
TLSFileFormatError Class in module mmLib.TLS
TLSFileFormatPDB Class in module mmLib.TLS
TLSFileFormatTLSOUT Class in module mmLib.TLS
TLSGroup Class in module mmLib.TLS
TLSGroupDesc Class in module mmLib.TLS
tlsout_regex_dict Variable in class mmLib.TLS.TLSFileFormatTLSOUT
tlsout_tls_desc Method in class mmLib.TLS.TLSFileFormatTLSOUT
TLSStructureAnalysis Class in module mmLib.TLS
Tr_0_0_0 Variable in module mmLib.SpaceGroups
Tr_0_0_12 Variable in module mmLib.SpaceGroups
Tr_0_0_13 Variable in module mmLib.SpaceGroups
Tr_0_0_14 Variable in module mmLib.SpaceGroups
Tr_0_0_16 Variable in module mmLib.SpaceGroups
Tr_0_0_23 Variable in module mmLib.SpaceGroups
Tr_0_0_34 Variable in module mmLib.SpaceGroups
Tr_0_0_56 Variable in module mmLib.SpaceGroups
Tr_0_12_0 Variable in module mmLib.SpaceGroups
Tr_0_12_12 Variable in module mmLib.SpaceGroups
Tr_0_12_14 Variable in module mmLib.SpaceGroups
Tr_0_12_34 Variable in module mmLib.SpaceGroups
Tr_12_0_0 Variable in module mmLib.SpaceGroups
Tr_12_0_12 Variable in module mmLib.SpaceGroups
Tr_12_0_14 Variable in module mmLib.SpaceGroups
Tr_12_0_34 Variable in module mmLib.SpaceGroups
Tr_12_12_0 Variable in module mmLib.SpaceGroups
Tr_12_12_12 Variable in module mmLib.SpaceGroups
Tr_12_12_14 Variable in module mmLib.SpaceGroups
Tr_12_12_34 Variable in module mmLib.SpaceGroups
Tr_13_23_16 Variable in module mmLib.SpaceGroups
Tr_13_23_23 Variable in module mmLib.SpaceGroups
Tr_14_14_14 Variable in module mmLib.SpaceGroups
Tr_14_14_34 Variable in module mmLib.SpaceGroups
Tr_14_34_14 Variable in module mmLib.SpaceGroups
Tr_14_34_34 Variable in module mmLib.SpaceGroups
Tr_23_13_13 Variable in module mmLib.SpaceGroups
Tr_23_13_56 Variable in module mmLib.SpaceGroups
Tr_34_14_14 Variable in module mmLib.SpaceGroups
Tr_34_14_34 Variable in module mmLib.SpaceGroups
Tr_34_34_14 Variable in module mmLib.SpaceGroups
Tr_34_34_34 Variable in module mmLib.SpaceGroups
transform Method in class mmLib.Superposition.SuperpositionResults
TURN Class in module mmLib.PDB
TVECT Class in module mmLib.PDB
type Class in module __builtin__
U2B Variable in module mmLib.Constants
UnitCell Module in package mmLib
UnitCell Class in module mmLib.UnitCell
update Method in class __builtin__.dict
update Method in class mmLib.Viewer.GLPropertyDict
update_cb Method in class mmLib.TLS.GLTLSChain
update_time Method in class mmLib.TLS.GLTLSGroup
values Method in class __builtin__.dict
Viewer Module in package mmLib
warning Method in class mmLib.ConsoleOutput.ConesoleOutput
warning Function in module mmLib.ConsoleOutput
write Method in class mmLib.PDB.PDBRecord
write Method in class mmLib.R3DDriver.TeeWrite
write Method in class mmLib.mmCIF.mmCIFFileWriter
write_cif_data Method in class mmLib.mmCIF.mmCIFFileWriter
write_file Method in class mmLib.mmCIF.mmCIFFileWriter
write_mstring Method in class mmLib.mmCIF.mmCIFFileWriter
write_multi_row_table Method in class mmLib.mmCIF.mmCIFFileWriter
write_one_row_table Method in class mmLib.mmCIF.mmCIFFileWriter
writeln Method in class mmLib.mmCIF.mmCIFFileWriter
XYZDict Class in module mmLib.GeometryDict
ZCat Class in module mmLib.FileIO

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