Everything

All Classes
mmLib.ConsoleOutput.ConesoleOutput
mmLib.FileIO.ZCat
mmLib.GeometryDict.XYZDict
mmLib.Library.ElementDesc
mmLib.Library.MonomerDesc
mmLib.mmCIF.mmCIFData
mmLib.mmCIF.mmCIFDictionary
mmLib.mmCIF.mmCIFFile
mmLib.mmCIF.mmCIFFileParser
mmLib.mmCIF.mmCIFFileWriter
mmLib.mmCIF.mmCIFRow
mmLib.mmCIF.mmCIFSave
mmLib.mmCIF.mmCIFTable
mmLib.mmCIFBuilder.mmCIFFileBuilder
mmLib.mmCIFBuilder.mmCIFStructureBuilder
mmLib.mmCIFDB.mmCIFDB
mmLib.OpenGLDriver.OpenGLDriver
mmLib.PDB.ANISOU
mmLib.PDB.ATOM
mmLib.PDB.AUTHOR
mmLib.PDB.CAVEAT
mmLib.PDB.CISPEP
mmLib.PDB.COMPND
mmLib.PDB.CONECT
mmLib.PDB.CRYST1
mmLib.PDB.CRYST2
mmLib.PDB.CRYST3
mmLib.PDB.CRYSTn
mmLib.PDB.DBREF
mmLib.PDB.END
mmLib.PDB.ENDMDL
mmLib.PDB.EXPDTA
mmLib.PDB.FORMUL
mmLib.PDB.HEADER
mmLib.PDB.HELIX
mmLib.PDB.HET
mmLib.PDB.HETATM
mmLib.PDB.HETNAM
mmLib.PDB.HETSYN
mmLib.PDB.HYDBND
mmLib.PDB.JRNL
mmLib.PDB.KEYWDS
mmLib.PDB.LINK
mmLib.PDB.MASTER
mmLib.PDB.MODEL
mmLib.PDB.MODRES
mmLib.PDB.MTRIX1
mmLib.PDB.MTRIX2
mmLib.PDB.MTRIX3
mmLib.PDB.MTRIXn
mmLib.PDB.OBSLTE
mmLib.PDB.ORIGX1
mmLib.PDB.ORIGX2
mmLib.PDB.ORIGX3
mmLib.PDB.ORIGXn
mmLib.PDB.PDBFile
mmLib.PDB.PDBRecord
mmLib.PDB.RecordProcessor
mmLib.PDB.REMARK
mmLib.PDB.REVDAT
mmLib.PDB.SCALE1
mmLib.PDB.SCALE2
mmLib.PDB.SCALE3
mmLib.PDB.SCALEn
mmLib.PDB.SEQADV
mmLib.PDB.SEQRES
mmLib.PDB.SHEET
mmLib.PDB.SIGATM
mmLib.PDB.SIGUIJ
mmLib.PDB.SITE
mmLib.PDB.SLTBRG
mmLib.PDB.SOURCE
mmLib.PDB.SPRSDE
mmLib.PDB.SSBOND
mmLib.PDB.TER
mmLib.PDB.TITLE
mmLib.PDB.TURN
mmLib.PDB.TVECT
mmLib.PDBBuilder.PDBFileBuilder
mmLib.PDBBuilder.PDBStructureBuilder
mmLib.R3DDriver.Raster3DDriver
mmLib.R3DDriver.TeeWrite
mmLib.Structure.AlphaHelix
mmLib.Structure.Altloc
mmLib.Structure.AminoAcidResidue
mmLib.Structure.Atom
mmLib.Structure.AtomList
mmLib.Structure.BetaSheet
mmLib.Structure.Bond
mmLib.Structure.Chain
mmLib.Structure.Fragment
mmLib.Structure.FragmentID
mmLib.Structure.Model
mmLib.Structure.NucleicAcidResidue
mmLib.Structure.Residue
mmLib.Structure.Segment
mmLib.Structure.Site
mmLib.Structure.Strand
mmLib.Structure.Structure
mmLib.StructureBuilder.StructureBuilder
mmLib.Superposition.SuperpositionResults
mmLib.TLS.GLTLSAtomList
mmLib.TLS.GLTLSChain
mmLib.TLS.GLTLSGroup
mmLib.TLS.TLSFile
mmLib.TLS.TLSFileFormat
mmLib.TLS.TLSFileFormatPDB
mmLib.TLS.TLSFileFormatTLSOUT
mmLib.TLS.TLSGroup
mmLib.TLS.TLSGroupDesc
mmLib.TLS.TLSStructureAnalysis
mmLib.UnitCell.UnitCell
mmLib.Viewer.GLAtomList
mmLib.Viewer.GLAxes
mmLib.Viewer.GLChain
mmLib.Viewer.GLDrawList
mmLib.Viewer.GLObject
mmLib.Viewer.GLPropertyDefault
mmLib.Viewer.GLPropertyDict
mmLib.Viewer.GLStructure
mmLib.Viewer.GLUnitCell
mmLib.Viewer.GLViewer

All Exceptions
mmLib.FileIO.FileIOUnsupportedFormat
mmLib.mmCIF.mmCIFError
mmLib.mmCIF.mmCIFSyntaxError
mmLib.PDB.PDBError
mmLib.PDB.PDBValueError
mmLib.R3DDriver.FinishMe
mmLib.Structure.AtomOverwrite
mmLib.Structure.ChainOverwrite
mmLib.Structure.FragmentOverwrite
mmLib.Structure.ModelOverwrite
mmLib.Structure.StructureError
mmLib.StructureBuilder.StructureBuilderError
mmLib.TLS.TLSError
mmLib.TLS.TLSFileFormatError

All Functions
addquaternion
ATOM_get_name
calc_angle
calc_anisotropy
calc_atom_centroid
calc_atom_mean_temp_factor
calc_CCuij
calc_distance
calc_DP2uij
calc_inertia_tensor
calc_itls_center_of_reaction
calc_itls_uiso
calc_LS_displacement
calc_rmsd
calc_s11_s22_s33
calc_Suij
calc_TLS_center_of_reaction
calc_TLS_least_squares_fit
calc_TLS_plus_b_least_squares_fit
calc_TLSCA_least_squares_fit
calc_torsion_angle
calc_Utls
cross
debug
disable
dmatrix
dmatrixu
enable
fatal
fragment_id_cmp
fragment_id_eq
fragment_id_ge
fragment_id_gt
fragment_id_le
fragment_id_lt
fragment_id_split
get_file_arg
get_file_extension
GetSpaceGroup
goodness_color
iter_fragments
iter_itls_uiso
iter_pdb_records
length
library_construct_element_desc
library_construct_monomer_desc
library_get_element_desc
library_get_monomer_desc
library_guess_element_from_name
library_is_amino_acid
library_is_nucleic_acid
library_is_water
LoadStructure
matrixmultiply43
normalize
open_fileobj
OpenFile
quaternionrmatrix
QuaternionToRotationMatrix
rgbf2rgbi
rgbi2rgbf
rmatrix
rmatrixquaternion
rmatrixu
rmatrixz
rquaternionu
SaveStructure
set_L_A
set_TLS_A
set_TLS_b
set_TLSiso_A
set_TLSiso_b
SetConsoleOutputObject
setmap
setmapf
setmapf_cif
setmapi
setmapi_cif
setmaps
setmaps_cif
solve_TLS_Ab
strRT
SuperimposeAtoms
SuperimposeAtomsOutlierRejection
SuperimposePoints
SuperimposePositions
test_module
test_module
test_module
test_module
test_module
test_module
test_module
test_module
test_module
test_module
warning

All Variables
ALT_RES_NAME_DICT
AMINO_ACID13_DICT
AMINO_ACID31_DICT
AMINO_ACID3_LIST
BASE_LINE_WIDTH
CA_PIVOT_ATOMS
CIF_BUILD_TABLES
COLOR_NAMES
COLOR_NAMES_CAPITALIZED
COLOR_RGBF
COLOR_RGBI
COLORS
console_output_object
ELEMENT_CACHE
ELEMENT_CIF_FILE
ELEMENT_DATA_PATH
ELEMENT_SYMBOL_DICT
GAUSS3C
HELIX_CLASS_LIST
MARGIN
MAX_LINE
MMLIB_MONOMER_DATA_PATH
MMLIB_MONOMERS_CIF
MONOMER_RES_NAME_CACHE
NUCLEIC_ACID_LIST
NUCLEIC_ACID_RES_NAME_DICT
PDBRecordMap
PDBRecordOrder
PROP_FRAC_RANGE
PROP_LINE_RANGE
PROP_OPACITY_RANGE
PROP_PROBABILTY_RANGE
RCSB_MONOMER_DATA_FILE
RCSB_MONOMER_DATA_PATH
RCSB_USE_ZIP
RCSB_ZIP
Rot_mX_mXY_mZ
Rot_mX_mXY_Z
Rot_mX_mY_mZ
Rot_mX_mY_Z
Rot_mX_mZ_mY
Rot_mX_mZ_Y
Rot_mX_Y_mZ
Rot_mX_Y_Z
Rot_mX_Z_mY
Rot_mX_Z_Y
Rot_mXY_mX_mZ
Rot_mXY_mX_Z
Rot_mXY_Y_mZ
Rot_mXY_Y_Z
Rot_mY_mX_mZ
Rot_mY_mX_Z
Rot_mY_mZ_mX
Rot_mY_mZ_X
Rot_mY_X_mZ
Rot_mY_X_Z
Rot_mY_XmY_mZ
Rot_mY_XmY_Z
Rot_mY_Z_mX
Rot_mY_Z_X
Rot_mZ_mX_mY
Rot_mZ_mX_Y
Rot_mZ_mY_mX
Rot_mZ_mY_X
Rot_mZ_X_mY
Rot_mZ_X_Y
Rot_mZ_Y_mX
Rot_mZ_Y_X
Rot_X_mY_mZ
Rot_X_mY_Z
Rot_X_mZ_mY
Rot_X_mZ_Y
Rot_X_XmY_mZ
Rot_X_XmY_Z
Rot_X_Y_mZ
Rot_X_Y_Z
Rot_X_Z_mY
Rot_X_Z_Y
Rot_XmY_mY_mZ
Rot_XmY_mY_Z
Rot_XmY_X_mZ
Rot_XmY_X_Z
Rot_Y_mX_mZ
Rot_Y_mX_Z
Rot_Y_mXY_mZ
Rot_Y_mXY_Z
Rot_Y_mZ_mX
Rot_Y_mZ_X
Rot_Y_X_mZ
Rot_Y_X_Z
Rot_Y_Z_mX
Rot_Y_Z_X
Rot_Z_mX_mY
Rot_Z_mX_Y
Rot_Z_mY_mX
Rot_Z_mY_X
Rot_Z_X_mY
Rot_Z_X_Y
Rot_Z_Y_mX
Rot_Z_Y_X
sg1
sg10
sg100
sg1003
sg1004
sg1005
sg1006
sg1007
sg1008
sg1009
sg101
sg1010
sg1011
sg1012
sg1013
sg1014
sg1015
sg1017
sg1018
sg102
sg1020
sg1021
sg1022
sg1023
sg103
sg104
sg105
sg1059
sg106
sg107
sg108
sg109
sg1094
sg11
sg110
sg111
sg112
sg113
sg114
sg1146
sg1148
sg115
sg1155
sg116
sg1160
sg1161
sg1166
sg1167
sg117
sg118
sg119
sg1197
sg12
sg120
sg121
sg122
sg123
sg124
sg125
sg126
sg127
sg128
sg129
sg13
sg130
sg131
sg132
sg133
sg134
sg135
sg136
sg137
sg138
sg139
sg14
sg140
sg141
sg142
sg143
sg144
sg145
sg146
sg147
sg148
sg149
sg15
sg150
sg151
sg152
sg153
sg154
sg155
sg156
sg157
sg158
sg159
sg16
sg160
sg161
sg162
sg163
sg164
sg165
sg166
sg167
sg168
sg169
sg17
sg170
sg171
sg172
sg173
sg174
sg175
sg176
sg177
sg178
sg179
sg18
sg180
sg181
sg182
sg183
sg184
sg185
sg186
sg187
sg188
sg189
sg19
sg190
sg191
sg192
sg193
sg194
sg195
sg196
sg197
sg198
sg199
sg2
sg20
sg200
sg2005
sg201
sg2017
sg2018
sg202
sg203
sg204
sg205
sg206
sg207
sg208
sg209
sg21
sg210
sg211
sg212
sg213
sg214
sg215
sg216
sg217
sg218
sg219
sg22
sg220
sg221
sg222
sg223
sg224
sg225
sg226
sg227
sg228
sg229
sg23
sg230
sg24
sg25
sg26
sg27
sg28
sg29
sg3
sg30
sg3004
sg3005
sg3018
sg31
sg32
sg33
sg34
sg35
sg36
sg37
sg38
sg39
sg4
sg40
sg41
sg42
sg43
sg44
sg45
sg46
sg47
sg48
sg49
sg5
sg50
sg51
sg52
sg53
sg54
sg55
sg56
sg57
sg58
sg59
sg6
sg60
sg61
sg62
sg63
sg64
sg65
sg66
sg67
sg68
sg69
sg7
sg70
sg71
sg72
sg73
sg74
sg75
sg76
sg77
sg78
sg79
sg8
sg80
sg81
sg82
sg83
sg84
sg85
sg86
sg87
sg88
sg89
sg9
sg90
sg91
sg92
sg93
sg94
sg95
sg96
sg97
sg98
sg99
SpaceGroupList
Tr_0_0_0
Tr_0_0_12
Tr_0_0_13
Tr_0_0_14
Tr_0_0_16
Tr_0_0_23
Tr_0_0_34
Tr_0_0_56
Tr_0_12_0
Tr_0_12_12
Tr_0_12_14
Tr_0_12_34
Tr_12_0_0
Tr_12_0_12
Tr_12_0_14
Tr_12_0_34
Tr_12_12_0
Tr_12_12_12
Tr_12_12_14
Tr_12_12_34
Tr_13_23_16
Tr_13_23_23
Tr_14_14_14
Tr_14_14_34
Tr_14_34_14
Tr_14_34_34
Tr_23_13_13
Tr_23_13_56
Tr_34_14_14
Tr_34_14_34
Tr_34_34_14
Tr_34_34_34


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