mmLib.mmCIFBuilder.mmCIFFileBuilder

Package mmLib :: Module mmCIFBuilder :: Class mmCIFFileBuilder

[show private | hide private]

Type mmCIFFileBuilder

object --+
         |
        mmCIFFileBuilder

Builds a mmCIF file from a Structure object.

Method Summary
	`__init__(self, struct, cif_file)`
	`add__atom_site(self)` Adds the _atom_site table.
	`add__cell(self)` Adds the _cell table.
	`add__entity(self)` Adds the entity table.
	`add__entity_poly(self)` Adds the _entity_poly table.
	`add__entry(self)` Add the _entry table.
	`add__symmetry(self)` Adds the _symmetry table.
	`get_entity_desc_from_id(self, entity_id)`
	`get_entity_desc_from_sequence(self, sequence)`
	`get_table(self, name)` Returns the self.cif_data[name] mmCIFTable, or it creates it and adds it to self.cif_data if it does not exist.
	`set_atom_site_row(self, asrow, atm, entity_desc, label_seq_id)` Add atom_site coordinate row.
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name
	`__hash__(x)` x.__hash__() <==> hash(x)
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T
	`__reduce__(...)` helper for pickle
	`__reduce_ex__(...)` helper for pickle
	`__repr__(x)` x.__repr__() <==> repr(x)
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value
	`__str__(x)` x.__str__() <==> str(x)

Method Details

Adds the _atom_site table.

Adds the _cell table.

Adds the entity table. The entity names are faked here, since it's really not clear to me how the names are chosen by the PDB.

Adds the _entity_poly table.

Add the _entry table.

Adds the _symmetry table.

Returns the self.cif_data[name] mmCIFTable, or it creates it and adds it to self.cif_data if it does not exist.

Add atom_site coordinate row.

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